Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PGW97_RS16265 Genome accession   NZ_CP117517
Coordinates   3547395..3548924 (-) Length   509 a.a.
NCBI ID   WP_273858021.1    Uniprot ID   -
Organism   Photobacterium sp. GSS17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3542395..3553924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW97_RS16240 - 3543268..3543441 (+) 174 WP_273858015.1 hypothetical protein -
  PGW97_RS16245 - 3543575..3543841 (+) 267 WP_047887477.1 YihD family protein -
  PGW97_RS16250 ccoG 3544119..3545540 (+) 1422 WP_047887478.1 cytochrome c oxidase accessory protein CcoG -
  PGW97_RS16255 - 3545650..3546639 (+) 990 WP_273858018.1 serine/threonine protein kinase -
  PGW97_RS16260 - 3546711..3547313 (+) 603 WP_047887480.1 thiol:disulfide interchange protein DsbA/DsbL -
  PGW97_RS16265 comM 3547395..3548924 (-) 1530 WP_273858021.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PGW97_RS16270 ilvG 3549331..3550977 (+) 1647 WP_273858023.1 acetolactate synthase 2 catalytic subunit -
  PGW97_RS16275 ilvM 3550977..3551225 (+) 249 WP_047887483.1 acetolactate synthase 2 small subunit -
  PGW97_RS16280 ilvE 3551246..3552181 (+) 936 WP_047887484.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 54288.53 Da        Isoelectric Point: 8.1304

>NTDB_id=786197 PGW97_RS16265 WP_273858021.1 3547395..3548924(-) (comM) [Photobacterium sp. GSS17]
MNLAIVHSRACVGVEAPPVTVEVHISNGMPALALVGLPETSVKEAKDRVRSAIVNAGFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPDTSLQNTEFLGELALSGELRPVKGALPAALAAKQAGRCLVVPDQNGNQVALVGKALHKSAPSL
LAVCGHLCGQASLSLSCSAPHEDPPPSGVSRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPDM
TVAEAMETAAVASLTQQSIHEGNWRRRPFRTPHHSSSMAALVGGGSVPRPGEISLAHNGILFLDEMPEFERKVLDSLREP
LESGEIVISRATSKMTFPARFQLIGALNPSPTGYYEGSQARTNPQAILRYLGRLSGPLLDRFDMSIEIPALPRGTLADGG
DRGEPSVVIRQRVAQARDIMQGRAGRVNALLSTRELDKYCALDKPDAEFLETALHQLGLSIRAYHRIIKVARTIADLAGC
ERISRAHLAEALGYRAMDRLLKQLSAQMV

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=786197 PGW97_RS16265 WP_273858021.1 3547395..3548924(-) (comM) [Photobacterium sp. GSS17]
ATGAACCTTGCTATTGTCCATAGTCGAGCGTGTGTGGGAGTGGAAGCGCCGCCGGTGACGGTGGAAGTCCATATCAGTAA
CGGAATGCCGGCACTGGCACTGGTGGGGTTGCCGGAAACCAGTGTGAAAGAGGCCAAGGATCGGGTCCGCAGTGCGATTG
TCAACGCCGGGTTTGAGTTCCCGTCCCGGCGGATAACGGTCAATCTGGCTCCGGCGGATTTACCCAAGGAAGGCGGCCGG
TTTGACCTGCCGATTGCGTTGGGGATACTCGCCGCTTCCGGCCAAATCCCTGATACATCACTGCAAAATACCGAGTTTTT
GGGGGAGTTAGCCCTGTCGGGGGAGCTGCGTCCGGTCAAGGGAGCGTTGCCTGCGGCGCTCGCGGCCAAGCAGGCCGGAC
GGTGCCTGGTCGTCCCGGATCAGAACGGCAATCAGGTGGCGCTGGTGGGGAAGGCTCTCCACAAATCGGCCCCGTCCTTG
CTGGCGGTATGTGGCCATTTGTGCGGACAGGCTAGCCTCTCGCTCAGCTGTTCGGCCCCGCATGAAGACCCGCCACCGAG
TGGCGTGTCCCGCGACATGCAGGACATCATTGGTCAGCAGCAAGGGAAACGGGCGCTGGAAATTGCCGCGGCCGGCGGGC
ACAACCTGCTCTTTTTGGGGCCGCCCGGAACCGGAAAAACCATGCTTGCGTCACGATTGTGCGATCTGTTGCCCGACATG
ACGGTCGCGGAAGCCATGGAAACCGCGGCCGTGGCGTCGCTGACTCAACAGAGCATTCACGAAGGCAACTGGCGGCGTCG
GCCGTTCAGAACGCCGCACCATTCCAGCTCGATGGCGGCGCTGGTGGGCGGGGGCTCGGTGCCCCGGCCGGGGGAGATTT
CCCTGGCGCATAACGGGATCCTGTTTTTGGATGAAATGCCGGAATTTGAACGTAAAGTGCTGGATTCTTTACGTGAACCG
CTGGAATCCGGCGAGATTGTGATCTCCCGAGCCACCAGCAAAATGACGTTTCCGGCTCGCTTTCAGCTGATTGGGGCATT
AAATCCCAGCCCGACCGGCTACTACGAAGGCAGTCAGGCACGCACCAACCCGCAGGCGATCTTGCGCTATCTGGGGCGGC
TGTCTGGCCCGTTGCTGGATCGTTTCGATATGTCGATTGAGATCCCTGCCCTGCCGCGCGGCACACTGGCGGATGGGGGC
GATCGGGGGGAGCCGAGTGTGGTGATCCGCCAACGGGTGGCGCAGGCGCGGGATATCATGCAAGGGCGTGCCGGACGGGT
GAATGCCCTGCTTTCGACTCGGGAGCTGGACAAGTATTGCGCGCTGGATAAGCCGGATGCGGAGTTTCTGGAAACCGCCT
TGCACCAGCTTGGTTTATCGATTCGGGCCTATCACCGTATTATCAAGGTGGCGCGCACCATTGCCGATTTAGCCGGGTGT
GAGCGGATCAGCCGGGCTCATCTGGCGGAAGCACTCGGTTACCGGGCGATGGATCGGTTATTGAAACAGTTGTCAGCTCA
AATGGTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

77.407

100

0.774
  comM Vibrio campbellii strain DS40M4

76.817

100

0.768
  comM Glaesserella parasuis strain SC1401

63.405

100

0.637
  comM Haemophilus influenzae Rd KW20

62.525

99.607

0.623
  comM Legionella pneumophila str. Paris

49.598

97.839

0.485
  comM Legionella pneumophila strain ERS1305867

49.598

97.839

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.874

99.411

0.436