Detailed information NTG0785742

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: PSH69_RS28905
• Genome accession: NZ_CP117461
• Coordinates: 6395811..6397304 (+)
• Length: 497 a.a.
• NCBI ID: WP_305410500.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP1740
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6390811..6402304

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH69_RS28870 (PSH69_28860)	sutA	6391125..6391448 (-)	324	WP_018927530.1	transcriptional regulator SutA	-
PSH69_RS28875 (PSH69_28865)	-	6391551..6391976 (-)	426	WP_305410496.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
PSH69_RS28880 (PSH69_28870)	-	6392190..6393527 (-)	1338	WP_305410497.1	ammonium transporter	-
PSH69_RS28885 (PSH69_28875)	glnK	6393563..6393901 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
PSH69_RS28890 (PSH69_28880)	-	6394318..6394584 (+)	267	WP_019580496.1	accessory factor UbiK family protein	-
PSH69_RS28895 (PSH69_28885)	-	6394968..6395426 (+)	459	WP_370695223.1	N-acetyltransferase	-
PSH69_RS28900 (PSH69_28890)	-	6395461..6395631 (+)	171	WP_305410499.1	hypothetical protein	-
PSH69_RS28905 (PSH69_28895)	comM	6395811..6397304 (+)	1494	WP_305410500.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
PSH69_RS28910 (PSH69_28900)	-	6397311..6398525 (-)	1215	WP_305410501.1	aldose 1-epimerase family protein	-
PSH69_RS28915 (PSH69_28905)	-	6398708..6400684 (-)	1977	WP_305410502.1	methyl-accepting chemotaxis protein	-
PSH69_RS28920 (PSH69_28910)	-	6400870..6401790 (-)	921	WP_305410503.1	LysR substrate-binding domain-containing protein	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 53007.12 Da
• Isoelectric Point: 8.2073

>NTDB_id=785742 PSH69_RS28905 WP_305410500.1 6395811..6397304(+) (comM) [Pseudomonas sp. FP1740]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLVVPRANAEEACLASGLKVIAVDHL
LQAVAHFNGHTPIEPYASNGLLYASKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPALKP
GDDTATAAELVADARERQHKRQGCANAFLDLPGLRRHCKLSTADENWLESACERLTLSLRAAHRLLKVARTLADLEQADG
IRREHLAEALQYRPTAL

Nucleotide

• Length: 1494 bp

>NTDB_id=785742 PSH69_RS28905 WP_305410500.1 6395811..6397304(+) (comM) [Pseudomonas sp. FP1740]
ATGTCCCTCTCCATCGTCCATAGCCGCGCCCAGATTGGTGTGGATGCGCCCGCCGTCACTGTAGAAGTGCATCTGGCCAA
CGGCTTGCCCTCGCTGACCATGGTCGGGCTGCCCGAGGCGGCGGTGAAGGAAAGCAAGGACCGGGTGCGTAGCGCGATCA
TCAATTCCGGCCTGCAATTTCCAGCGCGGCGCATCACCTTGAATCTCGCTCCCGCCGATTTGCCGAAGGATGGCGGGCGA
TTCGATCTGGCGATTGCCTTGGGGATTCTGTCGGCCAGCGTGCAGGTGCCGACGTTGACGCTGGATGACGTGGAGTGCCT
GGGAGAGCTGGCGCTGTCGGGCGCGGTGCGGGCGGTTCGCGGGGTGTTGCCGGCGGCGCTGGCAGCGCGCAAGGCCGGGC
GCACGCTGGTAGTCCCACGAGCGAATGCCGAGGAGGCGTGCCTGGCTTCGGGGTTGAAAGTGATTGCGGTGGACCATCTG
CTTCAAGCGGTCGCGCATTTCAATGGCCACACGCCCATCGAACCCTACGCTTCCAACGGTTTGCTCTACGCCAGCAAACC
CTATCCCGACTTGAACGAAGTGCAGGGACAACTTGCGGCCAAGCGAGCCTTGCTGATTGCAGCGGCGGGGGCTCATAACC
TGCTGTTCAGCGGTCCGCCGGGGACAGGAAAAACGTTGTTGGCGAGTCGTCTGCCGGGGCTGTTACCGCCATTGGCCGAG
AGCGAAGCACTGGAAGTCGCGGCGATTCAATCGGTCGCCAGTTGTGTGCCGCTGAGTCATTGGCCTCAGCGCCCCTTCCG
ACAGCCACACCACTCCGCTTCAGGCCCCGCACTGGTGGGTGGCGGTTCGAAACCGCAACCCGGCGAAATCACTCTCGCCC
ACCATGGTGTGCTGTTCCTTGATGAGCTTCCAGAGTTTGATCGCAAGGTATTGGAGGTATTGAGAGAGCCACTGGAATCC
GGCCACATCGTGATTTCCCGCGCCAAGGACCGCGTTCGCTTTCCGGCGCGCTTTCAATTGGTCGCAGCGATGAACCCCTG
CCCCTGTGGATATCTTGGCGAGCCAAGTGGTCGTTGTTCCTGCACGCCGGACATGGTGCAGCGCTATCGCAACAAACTGT
CGGGGCCGCTGCTGGACCGCATCGATCTGCACCTGACGGTTGCTCGTGAGGCCACGGCGTTGAATCCTGCGTTGAAACCC
GGCGACGATACAGCCACCGCCGCCGAGTTGGTTGCTGATGCAAGAGAGCGGCAACACAAACGCCAGGGTTGCGCCAATGC
CTTCCTCGACCTGCCAGGCCTACGCCGGCACTGTAAGTTATCCACAGCCGATGAAAACTGGCTGGAATCCGCCTGCGAGC
GTTTAACGCTGTCGTTGCGAGCGGCCCATCGACTGCTCAAGGTCGCGCGCACGCTGGCGGACCTTGAACAAGCCGACGGG
ATCAGACGCGAACACTTGGCCGAGGCGCTGCAATATCGGCCAACAGCGCTCTAG

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-493)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	55.152	99.598	0.549
comM	Vibrio cholerae strain A1552	55.152	99.598	0.549
comM	Haemophilus influenzae Rd KW20	53.707	100	0.539
comM	Glaesserella parasuis strain SC1401	53.4	100	0.537
comM	Legionella pneumophila str. Paris	50.201	100	0.503
comM	Legionella pneumophila strain ERS1305867	50.201	100	0.503
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.4	100	0.457