Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSH64_RS29220 Genome accession   NZ_CP117460
Coordinates   6417008..6418501 (+) Length   497 a.a.
NCBI ID   WP_305479369.1    Uniprot ID   -
Organism   Pseudomonas sp. FP1742     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6412008..6423501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH64_RS29190 (PSH64_29185) - 6412642..6413979 (-) 1338 WP_105340658.1 ammonium transporter -
  PSH64_RS29195 (PSH64_29190) glnK 6414015..6414353 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PSH64_RS29200 (PSH64_29195) - 6414770..6415030 (+) 261 WP_008076132.1 accessory factor UbiK family protein -
  PSH64_RS29205 (PSH64_29200) - 6415489..6416010 (+) 522 WP_305479367.1 Bro-N domain-containing protein -
  PSH64_RS29210 (PSH64_29205) - 6416063..6416368 (-) 306 WP_030129123.1 HigA family addiction module antitoxin -
  PSH64_RS29215 (PSH64_29210) - 6416699..6416884 (+) 186 WP_305479368.1 hypothetical protein -
  PSH64_RS29220 (PSH64_29215) comM 6417008..6418501 (+) 1494 WP_305479369.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PSH64_RS29225 (PSH64_29220) - 6418508..6419722 (-) 1215 WP_305479370.1 aldose 1-epimerase family protein -
  PSH64_RS30570 - 6419990..6420850 (-) 861 WP_370694487.1 methyl-accepting chemotaxis protein -
  PSH64_RS30575 - 6420893..6421966 (-) 1074 Protein_5755 Cache 3/Cache 2 fusion domain-containing protein -
  PSH64_RS29235 (PSH64_29230) - 6422151..6423071 (-) 921 WP_105342244.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53051.18 Da        Isoelectric Point: 8.2073

>NTDB_id=785712 PSH64_RS29220 WP_305479369.1 6417008..6418501(+) (comM) [Pseudomonas sp. FP1742]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLVVPRANAEEACLASGLKVIAVDHL
LQAVAHFNGHTPIEPYASNGLLYASKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPALKP
GDDTATAAELVAEARERQHKRQGCANAFLDLPSLRRHCKLSTADENWLESACERLTLSLRAAHRLLKVARTLADLEQADG
IRREHLAEALQYRPTAL

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=785712 PSH64_RS29220 WP_305479369.1 6417008..6418501(+) (comM) [Pseudomonas sp. FP1742]
ATGTCCCTATCCATCGTCCACAGCCGCGCCCAGATTGGTGTGGATGCGCCCGCCGTCACCGTAGAAGTGCATCTGGCCAA
CGGCTTGCCGTCGCTGACCATGGTCGGGCTGCCCGAGGCGGCGGTGAAGGAAAGCAAGGACCGGGTACGCAGCGCGATCA
TCAATTCGGGGCTGCAATTTCCAGCGCGGCGCATCACCTTGAATCTCGCTCCCGCCGATTTGCCGAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCCTTGGGGATTCTGTCGGCCAGCGTGCAGGTGCCGACGTTGACGCTGGATGACGTGGAGTGCCT
GGGAGAGCTCGCGCTGTCAGGCGCGGTGCGGGCGGTTCGCGGGGTGTTGCCGGCGGCGCTGGCGGCGCGCAAGGCCGGGC
GCACGCTGGTGGTGCCGCGAGCGAATGCCGAGGAGGCATGCCTGGCATCGGGGTTGAAGGTGATTGCGGTGGATCATCTG
CTTCAAGCGGTCGCGCATTTCAATGGTCACACGCCCATCGAACCCTACGCTTCCAACGGTTTGCTCTACGCCAGCAAACC
CTATCCGGACTTGAACGAAGTGCAGGGACAACTTGCGGCCAAGCGCGCCTTGCTGATTGCCGCCGCGGGGGCTCATAACC
TGCTGTTCAGCGGTCCGCCGGGGACGGGGAAAACGTTGTTGGCGAGTCGTCTGCCGGGGCTGTTACCGCCATTGGCCGAG
AGCGAAGCGCTGGAGGTCGCGGCGATTCAATCGGTGGCCAGTTGTGTGCCGTTGAGTCATTGGCCACAGCGCCCCTTCCG
ACAACCACACCACTCCGCTTCAGGCCCCGCACTGGTGGGTGGCGGTTCGAAACCGCAACCCGGCGAAATCACTCTCGCCC
ACCATGGTGTGTTGTTCCTCGATGAACTCCCGGAATTTGATCGCAAGGTATTGGAGGTATTGAGAGAGCCATTGGAATCC
GGCCACATCGTGATTTCCCGCGCCAAGGACCGCGTACGCTTTCCGGCGCGCTTTCAACTGGTGGCTGCGATGAATCCCTG
CCCCTGTGGATATCTTGGCGAACCAAGCGGCCGTTGCTCCTGTACGCCGGACATGGTTCAGCGCTATCGCAACAAGCTAT
CGGGGCCGCTGCTGGACCGCATCGATCTGCACCTGACGGTTGCTCGGGAGGCTACGGCGCTGAATCCTGCGTTGAAACCC
GGCGACGATACAGCCACCGCCGCCGAGCTGGTTGCCGAGGCAAGAGAGCGGCAACACAAACGCCAGGGTTGCGCCAATGC
CTTCCTCGACCTGCCAAGCCTACGCCGGCACTGTAAGTTATCCACAGCCGATGAAAACTGGCTTGAATCCGCCTGCGAGC
GTTTAACGCTGTCGTTGCGAGCGGCCCATCGACTGCTCAAGGTCGCGCGCACTCTGGCGGACCTTGAACAAGCCGACGGG
ATCAGACGCGAACACTTGGCCGAGGCGCTGCAATATCGGCCAACAGCACTCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.152

99.598

0.549
  comM Vibrio campbellii strain DS40M4

55.152

99.598

0.549
  comM Glaesserella parasuis strain SC1401

53.6

100

0.539
  comM Haemophilus influenzae Rd KW20

53.707

100

0.539
  comM Legionella pneumophila str. Paris

50.201

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.201

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.908

100

0.463