Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSH60_RS28090 Genome accession   NZ_CP117456
Coordinates   6086911..6088407 (+) Length   498 a.a.
NCBI ID   WP_010207462.1    Uniprot ID   A0A1N7UJK3
Organism   Pseudomonas simiae strain FP1885     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6081911..6093407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH60_RS28060 (PSH60_28055) sutA 6082058..6082384 (-) 327 WP_010207457.1 transcriptional regulator SutA -
  PSH60_RS28065 (PSH60_28060) - 6082488..6082913 (-) 426 WP_010207458.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PSH60_RS28070 (PSH60_28065) - 6083125..6084462 (-) 1338 WP_010207459.1 ammonium transporter -
  PSH60_RS28075 (PSH60_28070) glnK 6084497..6084835 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PSH60_RS28080 (PSH60_28075) - 6085258..6085518 (+) 261 WP_010207460.1 accessory factor UbiK family protein -
  PSH60_RS28085 (PSH60_28080) - 6085545..6086816 (+) 1272 WP_010207461.1 MFS transporter -
  PSH60_RS28090 (PSH60_28085) comM 6086911..6088407 (+) 1497 WP_010207462.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PSH60_RS28095 (PSH60_28090) - 6088404..6088988 (-) 585 WP_010207463.1 TetR/AcrR family transcriptional regulator -
  PSH60_RS28100 (PSH60_28095) - 6089100..6090014 (+) 915 WP_176331943.1 ABC transporter six-transmembrane domain-containing protein -
  PSH60_RS28105 (PSH60_28100) - 6090018..6091994 (-) 1977 WP_010207466.1 methyl-accepting chemotaxis protein -
  PSH60_RS28110 (PSH60_28105) - 6092172..6093092 (-) 921 WP_010207468.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53345.49 Da        Isoelectric Point: 8.2083

>NTDB_id=785600 PSH60_RS28090 WP_010207462.1 6086911..6088407(+) (comM) [Pseudomonas simiae strain FP1885]
MSLAIVHSRAQIGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPASMLDEVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVLAVDHL
LQVVAHLNGHQPIEPYQSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSVAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTALNPTQQA
GDNTAEASARVAQARDRQQQRQGCANAFLDLPGLRKHCKLAKVDECWLENACERLTLSLRAAHRLLKVARTLADLEHTDS
INRAHLAEALQYRPAAVG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=785600 PSH60_RS28090 WP_010207462.1 6086911..6088407(+) (comM) [Pseudomonas simiae strain FP1885]
ATGTCCCTCGCCATCGTCCACAGCCGTGCCCAAATTGGCGTCGAAGCTCCCGCCGTCACCGTCGAGGTGCACATGGCCAA
TGGTCTGCCGTCCCTGACACTGGTGGGTTTGCCGGAAACGGCGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATTC
TCAATTCTGCCCTGCAATACCCGGCCCGCCGCATCACCCTGAACCTGGCGCCTGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGACCTGGCGATTGCCTTGGGAATCCTCGCGGCCAGCGTGCAGGTGCCGGCGTCGATGCTCGATGAGGTGGAATGCCT
GGGAGAATTGGCCCTGTCCGGCGAAGTGCGGGCAGTGAAAGGCGTGTTGCCGGCAGCATTGGCGGCGCGCAAGGCGGGGC
GCACCGTAATCGTGCCGCGGGCGAATGCGGAAGAAGCCTGCCTGGCGTCGGGGTTGAAAGTGCTCGCCGTGGATCACTTG
CTGCAGGTGGTGGCACACCTGAACGGACATCAGCCTATCGAGCCCTACCAATCCGACGGATTGCTGTATCTGAACAAACC
TTACCCGGACCTGAGCGAAGTACAGGGCCAGCTCGCCGCCAAGCGCGCACTGCTGATCGCGGCGGCGGGGGCGCATAACC
TGCTGTTAAGCGGCCCGCCCGGCACCGGCAAGACATTGCTCGCCAGTCGCCTGCCGGGTTTGTTGCCACCGCTGAGTGAG
CAGGAAGCCCTGGAAGTGGCGGCGATTCAATCGGTCGTCAGCGTGGCGCCACTCAGTCATTGGCCGCACCGACCGTTTCG
CCAGCCGCATCATTCGGCGTCGGGCCCGGCGCTGGTGGGAGGCGGGTCAAAGCCGCAACCGGGAGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTGGATGAGCTGCCGGAGTTCGACCGCAAAGTATTGGAGGTGCTGCGCGAGCCACTGGAATCA
GGGCACATCGTGATTTCCCGTGCCCGCGACCGCGTGAGCTTCCCGGCCCGCTTCCAACTGGTCGCCGCCATGAACCCCTG
CCCATGCGGGTACCTCGGCGAACCCAGCGGACGTTGTCGCTGTACGCCGGAGCAGATCCAGCGCTATCGCAACAAGCTCT
CCGGGCCGCTGCTGGACCGCATCGACTTGCACCTCACTGTGGCGCGAGAAACCACTGCGTTGAATCCTACCCAGCAGGCA
GGCGATAACACAGCCGAGGCGTCGGCACGGGTCGCCCAGGCCCGCGATCGCCAACAACAACGCCAAGGCTGCGCGAATGC
TTTCCTTGATCTGCCGGGGCTACGCAAGCACTGCAAGCTGGCGAAGGTCGACGAATGCTGGCTGGAAAACGCCTGTGAGC
GGCTGACGCTATCCCTGCGCGCAGCCCATCGGCTGCTCAAAGTGGCACGCACCCTAGCCGACCTTGAGCACACCGATAGC
ATCAACCGGGCGCATCTGGCGGAAGCGTTGCAGTATCGGCCCGCGGCTGTTGGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N7UJK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.97

99.398

0.566
  comM Glaesserella parasuis strain SC1401

56.088

100

0.564
  comM Vibrio cholerae strain A1552

56.162

99.398

0.558
  comM Haemophilus influenzae Rd KW20

54.8

100

0.55
  comM Legionella pneumophila str. Paris

50.806

99.598

0.506
  comM Legionella pneumophila strain ERS1305867

50.806

99.598

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.47