Detailed information NTG0785543

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH97_RS23775
• Genome accession: NZ_CP117454
• Coordinates: 5249588..5250460 (+)
• Length: 290 a.a.
• NCBI ID: WP_305446929.1
• Uniprot ID: -
• Organism: Pseudomonas cucumis strain FP1935
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5244588..5255460

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH97_RS23750 (PSH97_23745)	-	5244862..5245158 (+)	297	WP_305449860.1	DUF2845 domain-containing protein	-
PSH97_RS23755 (PSH97_23750)	-	5245338..5245700 (-)	363	WP_305446925.1	BON domain-containing protein	-
PSH97_RS23760 (PSH97_23755)	pilA/pilAI	5246017..5246439 (-)	423	WP_305446926.1	pilin	Machinery gene
PSH97_RS23765 (PSH97_23760)	pilB	5246666..5248366 (+)	1701	WP_305446927.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSH97_RS23770 (PSH97_23765)	pilC	5248369..5249586 (+)	1218	WP_305446928.1	type II secretion system F family protein	Machinery gene
PSH97_RS23775 (PSH97_23770)	pilD	5249588..5250460 (+)	873	WP_305446929.1	A24 family peptidase	Machinery gene
PSH97_RS23780 (PSH97_23775)	coaE	5250457..5251080 (+)	624	WP_305446930.1	dephospho-CoA kinase	-
PSH97_RS23785 (PSH97_23780)	yacG	5251077..5251277 (+)	201	WP_077750267.1	DNA gyrase inhibitor YacG	-
PSH97_RS23790 (PSH97_23785)	-	5251287..5251502 (-)	216	WP_007938959.1	hypothetical protein	-
PSH97_RS23795 (PSH97_23790)	-	5251566..5252255 (-)	690	WP_305446931.1	energy-coupling factor ABC transporter permease	-
PSH97_RS23800 (PSH97_23795)	-	5252502..5253956 (+)	1455	WP_305446932.1	TrkH family potassium uptake protein	-
PSH97_RS23805 (PSH97_23800)	dctP	5254061..5255056 (+)	996	WP_305446933.1	C4-dicarboxylate TRAP substrate-binding protein DctP	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32127.28 Da
• Isoelectric Point: 7.3244

>NTDB_id=785543 PSH97_RS23775 WP_305446929.1 5249588..5250460(+) (pilD) [Pseudomonas cucumis strain FP1935]
MSLNEFLSLNPLAFTITALVIGLLIGSFLNVVVWRLPKMLEREWRLQAHDVLDLPPEAPGPAYNLILPHSECPDCGHRIR
AWENIPVLSYLFLRGRCSNCATPISKRYPLTELACGVLSAFVAWHFGFGWQACMVLVLSWGLLAMSLIDAEHQLLPDVLV
LPLIWLGLIVNSFGLFVSLHDALWGAVAGYMALWTVFWLFKLITGKDGIGYGDFKLLAMLGAWGGWQVLPLTILLSSLLG
AIIGVILLRLRDAKTSTPLPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=785543 PSH97_RS23775 WP_305446929.1 5249588..5250460(+) (pilD) [Pseudomonas cucumis strain FP1935]
ATGTCCTTGAACGAATTTCTGAGTCTCAACCCGCTGGCCTTCACGATCACCGCATTGGTGATCGGTTTGCTGATCGGCAG
TTTTCTCAACGTGGTGGTCTGGCGCCTGCCGAAAATGCTTGAGCGTGAATGGCGCTTGCAGGCCCATGACGTCCTGGACT
TGCCACCCGAAGCCCCCGGCCCGGCTTACAACCTGATACTGCCTCACTCCGAGTGCCCCGACTGTGGCCATCGGATTCGA
GCATGGGAAAACATTCCCGTGCTCAGTTATCTGTTTTTACGGGGGCGCTGCTCGAACTGTGCGACGCCGATCAGTAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTGCTGTCGGCGTTCGTCGCCTGGCATTTCGGCTTCGGTTGGCAGGCCTGCA
TGGTGCTGGTCCTGAGCTGGGGCCTGCTGGCGATGAGCCTGATCGACGCCGAACACCAGCTGTTGCCGGACGTGCTGGTG
CTGCCGTTGATATGGCTGGGGTTGATCGTCAACAGTTTCGGGCTCTTCGTGTCTCTGCATGACGCGCTCTGGGGCGCGGT
GGCCGGCTACATGGCGCTGTGGACGGTGTTCTGGCTGTTCAAGTTGATCACCGGCAAGGACGGCATCGGCTACGGCGACT
TCAAGCTCTTGGCGATGCTCGGCGCCTGGGGCGGTTGGCAGGTCCTGCCGCTGACCATCCTGCTGTCATCGCTGCTGGGC
GCCATCATCGGGGTGATTTTGCTGCGCCTGCGGGACGCAAAAACCTCGACGCCGCTGCCCTTTGGCCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.877	98.276	0.5
pilD	Vibrio campbellii strain DS40M4	50.355	97.241	0.49
pilD	Acinetobacter baumannii D1279779	50.903	95.517	0.486
pilD	Acinetobacter nosocomialis M2	50.181	95.517	0.479
pilD	Neisseria gonorrhoeae MS11	48.519	93.103	0.452