Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSH78_RS00925 Genome accession   NZ_CP117452
Coordinates   200394..201887 (-) Length   497 a.a.
NCBI ID   WP_305497945.1    Uniprot ID   -
Organism   Pseudomonas sp. FP198     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 195394..206887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH78_RS00910 (PSH78_00910) - 195581..196501 (+) 921 WP_305497940.1 LysR substrate-binding domain-containing protein -
  PSH78_RS26540 - 196840..197754 (+) 915 Protein_182 Cache 3/Cache 2 fusion domain-containing protein -
  PSH78_RS26545 - 197935..198657 (+) 723 WP_370695182.1 methyl-accepting chemotaxis protein -
  PSH78_RS00920 (PSH78_00920) - 199174..200388 (+) 1215 WP_305497943.1 aldose 1-epimerase family protein -
  PSH78_RS00925 (PSH78_00925) comM 200394..201887 (-) 1494 WP_305497945.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PSH78_RS26550 - 202154..202306 (+) 153 WP_370871145.1 hypothetical protein -
  PSH78_RS00930 (PSH78_00930) - 202353..203657 (+) 1305 WP_305497946.1 MFS transporter -
  PSH78_RS00935 (PSH78_00935) - 203912..205171 (-) 1260 WP_305497947.1 HlyD family secretion protein -
  PSH78_RS00940 (PSH78_00940) - 205164..206642 (-) 1479 WP_305497948.1 TolC family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53025.17 Da        Isoelectric Point: 7.8810

>NTDB_id=785466 PSH78_RS00925 WP_305497945.1 200394..201887(-) (comM) [Pseudomonas sp. FP198]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPETAVKESKDRVRSAIINSGLSFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLMLDDVECLGELALSGAVRPVRGVLPAALAARKAGRMLVVPWANAEEACLASGLKVIAVHHL
LEAVAHFIGHTPVEPFVSNGLLSASKPYPDLSEVQGQAGAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPKSEP
GDDTATAAERVADARERQQARQGCANAFLDLPGLRRHCKLSTTDEAWLETACERLTLSLRAAHRLLKVARTLADLEQAER
ISREHLAEALQYRPATV

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=785466 PSH78_RS00925 WP_305497945.1 200394..201887(-) (comM) [Pseudomonas sp. FP198]
ATGTCACTCGCCATCGTTCACAGCCGCGCCCAGGTCGGCGTCGAAGCACCCGCTGTCACCGTCGAAGTCCATCTGGCCAA
TGGCTTACCGTCGCTGACCATGGTCGGCCTGCCGGAGACGGCGGTGAAGGAAAGCAAGGATCGGGTGCGCAGCGCGATCA
TCAACTCGGGGCTCAGCTTTCCGGCGCGGCGCATCACCCTGAACCTGGCGCCGGCGGACCTGCCCAAGGACGGCGGGCGG
TTCGACCTGGCGATTGCCCTTGGCATCCTGTCGGCCAGCGTGCAGGTGCCGACGCTGATGCTGGACGACGTCGAATGCCT
CGGCGAGCTGGCGTTGTCCGGGGCGGTACGACCGGTACGCGGGGTGTTGCCCGCAGCGCTGGCGGCACGCAAGGCTGGCC
GCATGCTCGTGGTGCCGTGGGCGAATGCCGAGGAAGCCTGCCTGGCGTCGGGACTGAAAGTGATCGCAGTGCATCACCTG
CTCGAAGCGGTGGCGCATTTCATTGGCCATACCCCGGTCGAACCCTTTGTTTCCAACGGGCTGCTCTCGGCCAGCAAGCC
CTACCCCGATCTCAGTGAAGTCCAGGGCCAGGCCGGGGCCAAGCGCGCGTTGCTGATCGCGGCAGCAGGAGCCCATAACC
TGTTGTTCAGCGGCCCGCCCGGTACCGGCAAGACGCTGCTGGCGAGCCGTTTGCCAGGGTTATTGCCACCCTTGGCCGAA
AGCGAGGCCCTGGAAGTCGCGGCGATCCAGTCGGTCGCCAGTTGCGTGCCGTTGAGCCATTGGCCTCAGCGTCCGTTCCG
CCAGCCGCATCATTCGGCGTCCGGCCCGGCGCTGGTGGGCGGTGGGTCCAAGCCGCAACCGGGAGAAATCACCCTTGCTC
ATCACGGCGTGCTGTTTTTGGATGAATTGCCGGAATTCGACCGCAAGGTGCTGGAAGTGCTGAGAGAACCGTTGGAATCA
GGGCACATCGTGATTTCCCGTGCCCGGGACCGGGTGCGCTTTCCGGCGCGCTTCCAGCTGGTGGCGGCGATGAATCCCTG
CCCCTGTGGCTATCTCGGCGAACCCAGCGGTCGTTGCTCCTGCACACCGGACATGGTGCAGCGTTATCGCAACAAACTGT
CCGGCCCGCTGCTCGACCGGATCGACCTGCACCTGACCGTGGCCCGGGAAGCCACCGCACTGAACCCCAAGAGCGAACCG
GGGGACGACACCGCCACCGCCGCCGAACGGGTGGCCGATGCCCGTGAACGCCAGCAAGCACGCCAAGGCTGTGCCAATGC
GTTCCTGGACCTGCCGGGCCTGCGCCGGCACTGCAAACTGTCCACGACCGACGAAGCCTGGCTGGAAACCGCTTGCGAAC
GGCTGACCCTATCGCTGCGAGCCGCCCATCGCCTGCTCAAGGTCGCCCGGACATTGGCCGACCTTGAGCAAGCGGAGCGA
ATCAGCCGCGAACATCTGGCCGAAGCCCTGCAGTATCGCCCCGCCACGGTTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.96

99.598

0.557
  comM Vibrio cholerae strain A1552

55.758

99.598

0.555
  comM Haemophilus influenzae Rd KW20

53.707

100

0.539
  comM Glaesserella parasuis strain SC1401

53.2

100

0.535
  comM Legionella pneumophila str. Paris

50.806

99.799

0.507
  comM Legionella pneumophila strain ERS1305867

50.806

99.799

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.429

100

0.471