Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q3V86_RS05680 Genome accession   NZ_CP130547
Coordinates   1185854..1186627 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain SA04-SX     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180854..1191627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V86_RS05660 trmFO 1181198..1182505 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  Q3V86_RS05665 xerC 1182922..1183818 (+) 897 WP_001015606.1 tyrosine recombinase XerC -
  Q3V86_RS05670 hslV 1183815..1184360 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  Q3V86_RS05675 hslU 1184426..1185829 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  Q3V86_RS05680 codY 1185854..1186627 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q3V86_RS05685 - 1186678..1186770 (+) 93 WP_001790530.1 hypothetical protein -
  Q3V86_RS05690 rpsB 1186969..1187736 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  Q3V86_RS05695 - 1187770..1187883 (+) 114 WP_001789890.1 hypothetical protein -
  Q3V86_RS05700 tsf 1187918..1188799 (+) 882 WP_000201387.1 translation elongation factor Ts -
  Q3V86_RS05705 pyrH 1188936..1189658 (+) 723 WP_248313856.1 UMP kinase -
  Q3V86_RS05710 frr 1189677..1190231 (+) 555 WP_001280006.1 ribosome recycling factor -
  Q3V86_RS05715 - 1190604..1191374 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=785461 Q3V86_RS05680 WP_000055337.1 1185854..1186627(+) (codY) [Staphylococcus aureus strain SA04-SX]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=785461 Q3V86_RS05680 WP_000055337.1 1185854..1186627(+) (codY) [Staphylococcus aureus strain SA04-SX]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428