Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSH92_RS27825 Genome accession   NZ_CP117451
Coordinates   6292477..6293970 (+) Length   497 a.a.
NCBI ID   WP_305468820.1    Uniprot ID   -
Organism   Pseudomonas beijingensis strain FP2034     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6287477..6298970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH92_RS27805 (PSH92_27800) glnK 6288246..6288584 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PSH92_RS27810 (PSH92_27805) - 6289000..6289260 (+) 261 WP_122567538.1 accessory factor UbiK family protein -
  PSH92_RS27815 (PSH92_27810) - 6289297..6290574 (-) 1278 WP_122567539.1 sensor histidine kinase -
  PSH92_RS27820 (PSH92_27815) - 6290819..6292264 (-) 1446 WP_305468819.1 alpha/beta fold hydrolase -
  PSH92_RS27825 (PSH92_27820) comM 6292477..6293970 (+) 1494 WP_305468820.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PSH92_RS27830 (PSH92_27825) - 6293976..6295190 (-) 1215 WP_305468821.1 aldose 1-epimerase family protein -
  PSH92_RS27835 (PSH92_27830) - 6295519..6297495 (-) 1977 WP_122567543.1 methyl-accepting chemotaxis protein -
  PSH92_RS27840 (PSH92_27835) - 6297682..6298602 (-) 921 WP_122567544.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53001.04 Da        Isoelectric Point: 8.3638

>NTDB_id=785461 PSH92_RS27825 WP_305468820.1 6292477..6293970(+) (comM) [Pseudomonas beijingensis strain FP2034]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLNFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRPVRGVLPAALAARKAGRTLVVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPFVSNGLLSASKPYPDLNEVQGQAGAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVVSRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCACTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPKRDP
GDDTATVAERVAEARERQHKRQGCANAFLDLPGLRRHCKLSTTDETWLETACERLTLSLRAAHRLLKVARTLADLEQAGS
IRREHLAEALQYRPATA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=785461 PSH92_RS27825 WP_305468820.1 6292477..6293970(+) (comM) [Pseudomonas beijingensis strain FP2034]
ATGTCGCTCGCCATTGTCCATAGCCGCGCCCAAGTGGGGGTCGAGGCTCCTGCCGTTACCGTTGAAGTTCACCTGGCCAA
TGGCTTGCCGTCGCTGACGATGGTTGGCCTGCCGGAAGCGGCGGTGAAGGAAAGCAAGGATCGGGTGCGCAGCGCGATCA
TCAATTCGGGGCTGAATTTTCCTGCGCGGCGCATCACCCTGAACCTGGCGCCGGCGGACCTGCCCAAGGACGGCGGGCGC
TTCGACCTGGCCATCGCCTTGGGGATCCTATCGGCCAGCGTGCAGGTGCCGACCCTGACGCTGGACGACGTGGAATGCCT
CGGTGAACTGGCCTTGTCCGGCGCGGTGCGACCGGTGCGCGGGGTATTGCCTGCGGCGCTGGCGGCGCGCAAGGCCGGGC
GCACGCTGGTGGTGCCACGGGCCAATGCCGAGGAAGCTTGTCTGGCGTCGGGGCTGAAGGTGATCGCCGTGGATCATCTG
CTCGAAGCGGTAGCGCACTTCAACGGTCACACGCCGGTCGAGCCGTTCGTTTCCAATGGACTGCTCTCGGCCAGCAAGCC
TTACCCGGACCTGAATGAAGTACAAGGCCAGGCCGGGGCCAAGCGGGCCTTGCTGATTGCCGCTGCGGGGGCTCACAACC
TGTTGTTCAGCGGGCCACCCGGCACCGGCAAGACCCTGCTGGCGAGCCGCTTGCCAGGGCTGTTGCCGCCGCTGGCCGAG
AGCGAAGCCCTGGAAGTCGCGGCCATCCAGTCGGTGGCCAGTTGCGTGCCGTTGAGCCATTGGCCGCAACGCCCGTTTCG
CCAGCCACACCACTCGGCTTCCGGCCCGGCGCTGGTGGGTGGCGGGTCAAAGCCGCAGCCAGGGGAGATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTGGATGAGCTGCCGGAATTCGACCGCAAGGTGCTGGAGGTCTTGAGAGAACCGCTGGAGTCC
GGGCACATCGTGGTATCCCGCGCCCGGGATCGAGTCCGCTTCCCTGCCCGTTTCCAGTTGGTGGCGGCGATGAATCCCTG
CCCCTGTGGCTATCTTGGCGAGCCCAGCGGCCGCTGCGCCTGTACACCGGACATGGTGCAGCGCTACCGCAACAAACTCT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTCGCCCGGGAGGCCACGGCGTTGAACCCCAAGCGCGACCCC
GGAGACGATACGGCCACGGTCGCGGAACGCGTAGCCGAAGCCCGGGAACGCCAGCACAAGCGCCAGGGCTGCGCTAACGC
CTTCCTCGACCTGCCCGGCTTGCGCCGACACTGCAAGTTATCCACAACCGATGAAACCTGGCTGGAAACCGCCTGCGAGC
GGCTGACCCTGTCGCTACGTGCCGCTCACCGCTTGCTCAAGGTCGCCCGGACACTGGCGGACCTGGAGCAAGCGGGGAGC
ATTCGCCGCGAGCACCTGGCCGAAGCGTTGCAGTATCGGCCGGCTACGGCTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.758

99.598

0.555
  comM Vibrio cholerae strain A1552

55.556

99.598

0.553
  comM Haemophilus influenzae Rd KW20

53.908

100

0.541
  comM Glaesserella parasuis strain SC1401

53

100

0.533
  comM Legionella pneumophila str. Paris

50

99.799

0.499
  comM Legionella pneumophila strain ERS1305867

50

99.799

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.032

100

0.467