Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSH79_RS27075 Genome accession   NZ_CP117445
Coordinates   6008918..6010411 (+) Length   497 a.a.
NCBI ID   WP_305440461.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2196     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6003918..6015411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH79_RS27045 (PSH79_27040) - 6004279..6005616 (-) 1338 WP_100846852.1 ammonium transporter -
  PSH79_RS27050 (PSH79_27045) glnK 6005655..6005993 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PSH79_RS27055 (PSH79_27050) - 6006407..6006667 (+) 261 WP_305440458.1 accessory factor UbiK family protein -
  PSH79_RS27060 (PSH79_27055) - 6007028..6007555 (+) 528 WP_305440459.1 Bro-N domain-containing protein -
  PSH79_RS27065 (PSH79_27060) - 6007550..6007819 (-) 270 WP_305440460.1 HigA family addiction module antitoxin -
  PSH79_RS27070 (PSH79_27065) - 6008072..6008536 (+) 465 WP_095187946.1 hypothetical protein -
  PSH79_RS27075 (PSH79_27070) comM 6008918..6010411 (+) 1494 WP_305440461.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PSH79_RS27080 (PSH79_27075) - 6010408..6011622 (-) 1215 WP_305440462.1 aldose 1-epimerase family protein -
  PSH79_RS27085 (PSH79_27080) - 6011841..6013817 (-) 1977 WP_187680367.1 methyl-accepting chemotaxis protein -
  PSH79_RS27090 (PSH79_27085) - 6013999..6014919 (-) 921 WP_305440463.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53116.34 Da        Isoelectric Point: 8.1599

>NTDB_id=785304 PSH79_RS27075 WP_305440461.1 6008918..6010411(+) (comM) [Pseudomonas sp. FP2196]
MSLSIVHSRAQIGVEAPAVSVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSDGLMHAARPYPDLNEVQGQMAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
CEALEVAAIQSVASGVPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPTVKP
GEDSATAAQRVAEARERQLKRQSCANAFLDLPGLKRHCKLSTADETWLESACERLTLSLRSAHRLLKVARTLADLEQVDA
IRREHLAEALQYRPATP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=785304 PSH79_RS27075 WP_305440461.1 6008918..6010411(+) (comM) [Pseudomonas sp. FP2196]
ATGTCTCTCTCCATCGTCCACAGTCGCGCCCAGATTGGCGTGGAAGCCCCCGCTGTCAGCGTCGAAGTCCATCTGGCCAA
CGGCCTGCCGTCGCTGACCATGGTCGGTCTGCCCGAAGCGGCGGTGAAGGAGAGCAAGGATCGGGTGCGCAGCGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACCCTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGCGGGCGG
TTTGATCTGGCGATTGCCTTGGGGATTCTGTCGGCGAGTGTGCAGGTGCCGTGTCTTACGCTGGATGATGTGGAATGTCT
GGGTGAGTTGGCATTGTCCGGCGCAGTACGAGCGGTGCGCGGCGTGTTGCCGGCAGCGTTGGCGGCGCGCAAGGCGGGGC
GTGCGCTGGTGGTGCCGCGGGCGAATGCCGAGGAGGCGTGCCTGGCTTCGGGGTTGAAGGTGTTTGCGGTGGATCATTTG
CTGGAGGCGGTGGCGCATTTCAACGGCCATACGCCGGTGGAGCCTTACGTGTCGGACGGTTTGATGCATGCCGCCAGACC
CTATCCAGACCTGAACGAAGTGCAGGGGCAAATGGCAGCCAAACGGGCGCTGCTGATTGCCGCAGCGGGTGCGCATAACC
TGTTGTTCAGCGGACCGCCGGGGACGGGCAAGACGCTGTTGGCCAGTCGATTGCCGGGATTGCTCCCGCCGCTCTCCGAA
TGCGAGGCGCTGGAAGTCGCGGCGATTCAATCCGTCGCCAGCGGCGTGCCCCTGACCCATTGGCCGCAACGGCCCTTCCG
CCAGCCGCACCATTCTGCATCGGGGCCGGCGCTGGTCGGTGGCAGCTCGAAACCGCAACCCGGCGAGATCACCCTCGCCC
ACCATGGTGTGCTGTTTCTCGATGAGCTGCCTGAGTTCGATCGCAAGGTGCTTGAGGTACTGCGCGAGCCTCTGGAGTCG
GGGCACATCGTGATCGCCCGAGCCAAGGATCGCGTACGATTTCCGGCACGCTTTCAATTGGTGGCGGCGATGAACCCGTG
TCCCTGTGGATATCTTGGCGAGCCGAGCGGCAAGTGTTCGTGCACACCGGACATGGTTCAGCGATACCGCAACAAGCTGT
CAGGGCCGCTGCTGGATCGGATTGATCTGCACCTGACGGTGGCGCGGGAGGCGACGGCGTTGAATCCGACGGTTAAGCCG
GGCGAAGACAGCGCCACGGCCGCGCAACGTGTTGCCGAGGCGCGAGAACGGCAACTGAAACGCCAGTCCTGCGCCAATGC
CTTTCTCGATCTGCCGGGCCTGAAGCGGCACTGCAAGTTATCCACAGCCGACGAAACCTGGCTGGAGTCTGCCTGTGAGC
GACTGACGTTGTCGCTGCGCTCGGCCCATCGTTTGCTCAAAGTCGCCAGAACCCTGGCAGACCTTGAGCAAGTCGATGCA
ATCAGGCGTGAGCACTTGGCCGAAGCGCTGCAATACCGGCCGGCGACGCCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.949

99.598

0.547
  comM Vibrio campbellii strain DS40M4

54.747

99.598

0.545
  comM Glaesserella parasuis strain SC1401

52.8

100

0.531
  comM Haemophilus influenzae Rd KW20

52.8

100

0.531
  comM Legionella pneumophila str. Paris

50.602

100

0.507
  comM Legionella pneumophila strain ERS1305867

50.602

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.89

100

0.451