Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSH79_RS02055 Genome accession   NZ_CP117445
Coordinates   454938..456002 (+) Length   354 a.a.
NCBI ID   WP_305440997.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2196     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449938..461002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH79_RS02045 (PSH79_02045) - 450841..452063 (+) 1223 WP_370872524.1 IS3 family transposase -
  PSH79_RS02050 (PSH79_02050) - 452273..454720 (-) 2448 WP_305440995.1 penicillin-binding protein 1A -
  PSH79_RS02055 (PSH79_02055) comM 454938..456002 (+) 1065 WP_305440997.1 pilus assembly protein PilM Machinery gene
  PSH79_RS02060 (PSH79_02060) - 456002..456568 (+) 567 WP_305440999.1 PilN domain-containing protein -
  PSH79_RS02065 (PSH79_02065) pilO 456565..457188 (+) 624 WP_305441001.1 type 4a pilus biogenesis protein PilO -
  PSH79_RS02070 (PSH79_02070) - 457185..457712 (+) 528 WP_305441003.1 pilus assembly protein PilP -
  PSH79_RS02075 (PSH79_02075) pilQ 457726..459813 (+) 2088 WP_305441004.1 type IV pilus secretin PilQ Machinery gene
  PSH79_RS02080 (PSH79_02080) aroK 459818..460336 (+) 519 WP_187679606.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38167.65 Da        Isoelectric Point: 4.7417

>NTDB_id=785279 PSH79_RS02055 WP_305440997.1 454938..456002(+) (comM) [Pseudomonas sp. FP2196]
MLGLFNKKTNTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPANAVVEKNIAELEGVGQALSRVLVKARTGNKNVAV
AVAGSAVITKIIEMDAGLTDDELENQLKIEADQYIPYPLDEVAIDFEVQGVSPRNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATQLAASQERLTVAVVDIGATMTTLSVLHNGKIIYTREQLFGGRQLTEEIQRRYGLTI
EQAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFFASGQYNAVDHILLAGGTASVPGLDRLIEQRLNTPTQVANP
FSDMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=785279 PSH79_RS02055 WP_305440997.1 454938..456002(+) (comM) [Pseudomonas sp. FP2196]
GTGCTGGGACTCTTCAATAAAAAGACCAATACGTTACTGGGGATCGACATCAGCTCCACCTCGGTGAAGCTGCTGGAATT
GAGCCGTCAGGGCGACCGCTACCGGGTTGAGGCATACGCGGTGGAGCCGTTGCCGGCGAACGCCGTGGTCGAAAAAAACA
TCGCCGAGCTCGAAGGTGTGGGCCAGGCCCTGAGCCGGGTGCTGGTCAAGGCACGCACCGGCAACAAGAACGTGGCGGTG
GCGGTGGCCGGTTCGGCGGTGATCACCAAGATCATCGAAATGGATGCGGGCCTGACCGACGACGAGCTGGAGAACCAGCT
CAAGATTGAAGCCGACCAATACATTCCCTATCCGCTGGACGAAGTCGCCATCGACTTCGAAGTCCAGGGCGTCTCGCCGC
GTAACCCCGAGCGCGTCAACGTGCTGCTCGCCGCCTGCCGCAAGGAAAACGTCGAAGTCCGTGAAGCGGCCCTCGCGCTG
GCCGGGCTTACCGCTCGAGTGGTCGACGTCGAGGCGTATGCGCTGGAGCGCTCGTTTGGGTTGCTCGCGACGCAGTTGGC
CGCGTCCCAGGAGCGTCTGACCGTAGCGGTGGTCGACATCGGCGCGACCATGACCACCCTCAGCGTCCTGCACAACGGCA
AGATCATCTACACCCGCGAGCAACTCTTTGGTGGCCGGCAACTGACCGAAGAAATCCAGCGCCGCTATGGCCTGACCATC
GAGCAGGCGGGCCTTGCGAAAAAACAGGGCGGCCTGCCCGACGACTACGTCAGCGAAGTGCTGCAGCCGTTTCGCGAGGC
GCTGGTGCAGCAGGTGTCGCGCTCTTTGCAGTTCTTCTTCGCCTCCGGGCAATACAACGCGGTCGATCACATCCTGCTGG
CCGGCGGCACGGCGTCGGTACCGGGGCTGGATCGCCTGATCGAGCAACGCCTGAATACCCCGACGCAGGTGGCCAATCCT
TTTTCCGACATGGCCCTGAGCAGTAAGGTCAACGCCGGGGCCCTGGCCAGTGACGCGCCAGCCCTGATGATTGCCTGCGG
GCTCGCGCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.497

100

0.565
  pilM Acinetobacter baumannii D1279779

56.215

100

0.562
  comM Acinetobacter baylyi ADP1

55.65

100

0.557
  pilM Legionella pneumophila strain ERS1305867

48.023

100

0.48