Detailed information NTG0785251

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: PSH83_RS28105
• Genome accession: NZ_CP117443
• Coordinates: 6351213..6352706 (+)
• Length: 497 a.a.
• NCBI ID: WP_305468820.1
• Uniprot ID: -
• Organism: Pseudomonas beijingensis strain FP2262
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6346213..6357706

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH83_RS28075 (PSH83_28075)	sutA	6346237..6346560 (-)	324	WP_072406034.1	transcriptional regulator SutA	-
PSH83_RS28080 (PSH83_28080)	-	6346663..6347088 (-)	426	WP_122567822.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
PSH83_RS28085 (PSH83_28085)	-	6347301..6348635 (-)	1335	WP_305491320.1	ammonium transporter	-
PSH83_RS28090 (PSH83_28090)	glnK	6348669..6349007 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
PSH83_RS28095 (PSH83_28095)	-	6349423..6349683 (+)	261	WP_122567538.1	accessory factor UbiK family protein	-
PSH83_RS28100 (PSH83_28100)	-	6349720..6350997 (-)	1278	WP_305491321.1	sensor histidine kinase	-
PSH83_RS28105 (PSH83_28105)	comM	6351213..6352706 (+)	1494	WP_305468820.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
PSH83_RS28110 (PSH83_28110)	-	6352712..6353926 (-)	1215	WP_305491322.1	aldose 1-epimerase family protein	-
PSH83_RS28115 (PSH83_28115)	-	6354255..6356231 (-)	1977	WP_305491323.1	methyl-accepting chemotaxis protein	-
PSH83_RS28120 (PSH83_28120)	-	6356418..6357338 (-)	921	WP_122567544.1	LysR substrate-binding domain-containing protein	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 53001.04 Da
• Isoelectric Point: 8.3638

>NTDB_id=785251 PSH83_RS28105 WP_305468820.1 6351213..6352706(+) (comM) [Pseudomonas beijingensis strain FP2262]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLNFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRPVRGVLPAALAARKAGRTLVVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPFVSNGLLSASKPYPDLNEVQGQAGAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVVSRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCACTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPKRDP
GDDTATVAERVAEARERQHKRQGCANAFLDLPGLRRHCKLSTTDETWLETACERLTLSLRAAHRLLKVARTLADLEQAGS
IRREHLAEALQYRPATA

Nucleotide

• Length: 1494 bp

>NTDB_id=785251 PSH83_RS28105 WP_305468820.1 6351213..6352706(+) (comM) [Pseudomonas beijingensis strain FP2262]
ATGTCGCTCGCCATTGTCCACAGCCGCGCCCAAGTGGGGGTGGAGGCTCCTGCCGTTACCGTTGAAGTTCACCTGGCCAA
TGGCTTGCCGTCGCTGACGATGGTTGGCCTGCCGGAAGCGGCGGTGAAGGAAAGCAAGGATCGGGTGCGCAGCGCGATCA
TCAATTCGGGGCTGAATTTTCCGGCGCGGCGCATCACCCTGAACCTGGCGCCGGCGGACCTGCCCAAGGACGGCGGGCGC
TTCGACCTGGCCATCGCCTTGGGGATCCTATCGGCCAGCGTGCAGGTGCCGACCCTGACGCTGGACGACGTGGAATGCCT
CGGTGAACTGGCCTTGTCCGGCGCGGTGCGACCGGTGCGCGGGGTATTGCCTGCGGCGCTGGCGGCGCGCAAGGCCGGGC
GCACGCTGGTGGTGCCACGGGCCAATGCCGAGGAAGCTTGTCTGGCGTCGGGGCTGAAGGTGATCGCCGTGGATCATCTG
CTCGAAGCGGTAGCGCACTTCAACGGTCACACGCCGGTCGAGCCGTTCGTTTCCAATGGACTGCTCTCGGCCAGCAAGCC
TTACCCGGACCTGAATGAAGTACAAGGCCAGGCCGGGGCCAAGCGGGCCTTGCTGATTGCCGCTGCGGGGGCTCACAACC
TGTTGTTCAGCGGGCCACCCGGCACCGGCAAGACCCTGCTGGCGAGCCGCTTGCCAGGGCTGTTGCCGCCGCTGGCCGAG
AGCGAAGCCCTGGAAGTCGCGGCCATCCAGTCGGTGGCCAGTTGCGTGCCGTTGAGCCATTGGCCGCAACGCCCGTTTCG
CCAGCCACACCACTCGGCTTCCGGCCCGGCGCTGGTGGGTGGCGGGTCAAAGCCGCAGCCAGGGGAGATCACCCTCGCTC
ACCATGGCGTGCTGTTTCTGGATGAGCTGCCGGAATTCGACCGCAAGGTGCTGGAGGTCTTGAGAGAACCGCTGGAGTCC
GGGCACATCGTGGTATCCCGCGCCCGGGATCGAGTCCGCTTCCCTGCCCGTTTCCAGTTGGTGGCGGCGATGAATCCCTG
CCCCTGTGGCTATCTTGGCGAGCCCAGCGGCCGCTGCGCCTGTACACCGGACATGGTGCAGCGCTACCGCAACAAACTCT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTCGCCCGGGAGGCCACGGCGTTGAACCCCAAGCGCGACCCC
GGAGACGATACGGCCACGGTCGCGGAACGCGTAGCCGAAGCCCGGGAACGCCAGCACAAGCGCCAGGGCTGCGCTAACGC
CTTCCTCGACCTGCCCGGCTTGCGCCGACACTGCAAGTTATCCACAACCGATGAAACCTGGCTGGAAACCGCCTGCGAGC
GGCTGACCCTGTCGCTACGTGCCGCTCACCGCTTGCTCAAGGTCGCCCGGACACTGGCGGACCTGGAGCAAGCGGGGAGC
ATTCGCCGCGAGCACCTGGCCGAAGCGTTGCAGTATCGGCCGGCTACGGCTTGA

Domains

Predicted by InterProScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-493)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	55.758	99.598	0.555
comM	Vibrio cholerae strain A1552	55.556	99.598	0.553
comM	Haemophilus influenzae Rd KW20	53.908	100	0.541
comM	Glaesserella parasuis strain SC1401	53	100	0.533
comM	Legionella pneumophila str. Paris	50	99.799	0.499
comM	Legionella pneumophila strain ERS1305867	50	99.799	0.499
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.032	100	0.467