Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSH66_RS29015 Genome accession   NZ_CP117432
Coordinates   6297996..6299492 (+) Length   498 a.a.
NCBI ID   WP_305428092.1    Uniprot ID   -
Organism   Pseudomonas sp. FP597     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6292996..6304492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH66_RS28985 (PSH66_28975) - 6293628..6294323 (+) 696 WP_003176876.1 HAD family hydrolase -
  PSH66_RS28990 (PSH66_28980) sutA 6294413..6294742 (-) 330 WP_305428091.1 transcriptional regulator SutA -
  PSH66_RS28995 (PSH66_28985) - 6294845..6295270 (-) 426 WP_003176879.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PSH66_RS29000 (PSH66_28990) - 6295482..6296819 (-) 1338 WP_003176880.1 ammonium transporter -
  PSH66_RS29005 (PSH66_28995) glnK 6296854..6297192 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PSH66_RS29010 (PSH66_29000) - 6297614..6297874 (+) 261 WP_141062866.1 accessory factor UbiK family protein -
  PSH66_RS29015 (PSH66_29005) comM 6297996..6299492 (+) 1497 WP_305428092.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PSH66_RS29020 (PSH66_29010) - 6299566..6301542 (-) 1977 WP_003176885.1 methyl-accepting chemotaxis protein -
  PSH66_RS29025 (PSH66_29015) - 6301722..6302642 (-) 921 WP_003176886.1 LysR substrate-binding domain-containing protein -
  PSH66_RS29030 (PSH66_29020) - 6302795..6304199 (+) 1405 Protein_5734 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53478.84 Da        Isoelectric Point: 8.1565

>NTDB_id=784977 PSH66_RS29015 WP_305428092.1 6297996..6299492(+) (comM) [Pseudomonas sp. FP597]
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDEVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLACGLKVIAVDHL
LQVVAHLNGHVPIEPYKSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLCHWPHRPFRQPHHSASGPALVGSGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTALNPTQKT
GDTTATASAQVARARDRQQQRQGCANAFLDLPGLREHCQLLKVDEGWLESACERLTLSLRAAHRLLKVARTLADLDQADA
ITRDHLKEALQYRPAAVT

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=784977 PSH66_RS29015 WP_305428092.1 6297996..6299492(+) (comM) [Pseudomonas sp. FP597]
ATGTCCCTCGCCATTGTTCACAGCCGCGCCCAGGTCGGCGTCGAAGCCCCCGCCGTCACCGTTGAAGTACACATGGCCAA
TGGGTTGCCGTCCCTGACATTGGTGGGCCTGCCCGAAACCGCCGTCAAGGAGAGCAAAGACCGCGTGCGCAGCGCCATCC
TCAACTCCGCGCTGCAATATCCCGCGCGCCGCATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGTGGGCGT
TTTGATTTGGCGATAGCCCTGGGGATCCTGGCGGCCAGTGTGCAGGTCCCGGCGTTGATGCTCGACGAGGTGGAATGCCT
AGGGGAATTGGCGTTGTCCGGTGAGGTACGCGCGGTGAAAGGCGTGTTGCCGGCCGCGTTGGCGGCGCGCAAGGCCGGAC
GCACCGTGATAGTGCCACGGGCAAATGCCGAGGAGGCCTGCCTGGCTTGCGGATTGAAGGTCATTGCAGTGGATCACCTG
TTGCAGGTGGTGGCGCACCTGAATGGGCACGTGCCGATAGAGCCCTACAAATCCGATGGCTTGCTGTATCTGAACAAGCC
CTACCCGGACCTGAGCGAAGTGCAGGGCCAGCTCGCCGCCAAGCGTGCATTGCTGATCGCCGCGGCGGGTGCGCACAACC
TGCTGTTCAGCGGGCCGCCGGGTACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCGGGTTTGCTACCGCCGCTGAGCGAA
CAGGAGGCCCTGGAGGTGGCGGCGATCCAGTCTGTGGTCAGCCTGGCGCCACTTTGCCATTGGCCGCACCGGCCGTTTCG
TCAACCCCACCATTCAGCATCAGGCCCCGCATTGGTGGGCAGCGGCTCGAAACCGCAGCCAGGGGAAATTACCCTGGCTC
ACCACGGGGTGTTGTTCCTGGATGAGCTACCGGAGTTCGATCGCAAAGTGCTGGAGGTATTGCGCGAGCCATTGGAGTCA
GGACACATCGTGATTTCCCGTGCTAGGGACCGAGTGAGTTTCCCGGCGCGTTTCCAACTGGTGGCAGCCATGAATCCCTG
CCCTTGCGGTTATATGGGCGAGCCCAGTGGGCGCTGTCGCTGCACGCCGGAGCAGATCCAGCGGTATCGGAACAAGCTCT
CCGGGCCGTTGCTGGACCGGATCGACCTGCACCTCACCGTTGCGCGAGAAACGACCGCGCTGAACCCAACCCAGAAAACC
GGTGACACAACGGCAACGGCCTCCGCCCAGGTGGCCAGGGCTCGCGACCGCCAGCAACAGCGCCAGGGCTGCGCCAATGC
GTTCCTTGATCTGCCGGGGCTGCGTGAGCACTGCCAACTGCTGAAAGTCGACGAAGGCTGGCTGGAGAGCGCCTGCGAGC
GACTGACGTTGTCACTGCGCGCGGCGCACCGATTGCTGAAGGTGGCACGCACCCTGGCAGATCTGGATCAGGCGGACGCG
ATCACCCGTGACCACTTGAAAGAGGCCCTGCAATATCGGCCAGCCGCAGTCACTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.96

99.398

0.556
  comM Vibrio cholerae strain A1552

55.556

99.398

0.552
  comM Glaesserella parasuis strain SC1401

54.89

100

0.552
  comM Haemophilus influenzae Rd KW20

54.6

100

0.548
  comM Legionella pneumophila str. Paris

50.202

99.598

0.5
  comM Legionella pneumophila strain ERS1305867

50.202

99.598

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.328

100

0.458