Detailed information NTG0784898

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: PSH85_RS27435
• Genome accession: NZ_CP117429
• Coordinates: 5928046..5929542 (+)
• Length: 498 a.a.
• NCBI ID: WP_042570933.1
• Uniprot ID: -
• Organism: Pseudomonas simiae strain FP689
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5923046..5934542

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH85_RS27405 (PSH85_27400)	sutA	5923193..5923519 (-)	327	WP_010207457.1	transcriptional regulator SutA	-
PSH85_RS27410 (PSH85_27405)	-	5923623..5924048 (-)	426	WP_010207458.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
PSH85_RS27415 (PSH85_27410)	-	5924260..5925597 (-)	1338	WP_010207459.1	ammonium transporter	-
PSH85_RS27420 (PSH85_27415)	glnK	5925632..5925970 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
PSH85_RS27425 (PSH85_27420)	-	5926393..5926653 (+)	261	WP_010207460.1	accessory factor UbiK family protein	-
PSH85_RS27430 (PSH85_27425)	-	5926680..5927951 (+)	1272	WP_021492607.1	MFS transporter	-
PSH85_RS27435 (PSH85_27430)	comM	5928046..5929542 (+)	1497	WP_042570933.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
PSH85_RS27440 (PSH85_27435)	-	5929539..5930123 (-)	585	WP_044288170.1	TetR/AcrR family transcriptional regulator	-
PSH85_RS27445 (PSH85_27440)	-	5930235..5931150 (+)	916	Protein_5397	ABC transporter six-transmembrane domain-containing protein	-
PSH85_RS27450 (PSH85_27445)	-	5931164..5933131 (-)	1968	Protein_5398	methyl-accepting chemotaxis protein	-
PSH85_RS27455 (PSH85_27450)	-	5933309..5934229 (-)	921	WP_010207468.1	LysR substrate-binding domain-containing protein	-

Sequence

Protein

• Length: 498 a.a.
• Molecular weight: 53417.60 Da
• Isoelectric Point: 8.2079

>NTDB_id=784898 PSH85_RS27435 WP_042570933.1 5928046..5929542(+) (comM) [Pseudomonas simiae strain FP689]
MSLAIVHSRAQIGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPASMLDEVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVLAVDHL
LQVVAHLNGHQPIEPYKSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSVAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTALNPTQQA
GDNTAEASARVAQARDRQQQRQGCANAFLDLPELRKHCKLAKVDECWLENACERLTLSLRAAHRLLKVARTLADLEHTDS
INRAHLAEALQYRPAAVG

Nucleotide

• Length: 1497 bp

>NTDB_id=784898 PSH85_RS27435 WP_042570933.1 5928046..5929542(+) (comM) [Pseudomonas simiae strain FP689]
ATGTCCCTCGCCATCGTCCACAGCCGTGCCCAAATTGGGGTCGAAGCTCCCGCCGTCACCGTCGAGGTGCACATGGCCAA
TGGTCTGCCGTCCCTGACACTGGTGGGTTTGCCGGAAACGGCGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATTC
TCAATTCTGCCCTGCAATACCCGGCCCGCCGCATCACCCTGAACCTGGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGACCTGGCGATTGCCTTGGGAATCCTCGCGGCCAGCGTGCAGGTGCCGGCGTCGATGCTCGACGAGGTGGAATGCCT
GGGAGAATTGGCCCTGTCCGGCGAAGTGCGGGCAGTGAAAGGCGTGTTGCCGGCAGCATTGGCGGCGCGCAAGGCGGGGC
GCACCGTAATCGTGCCGCGGGCGAATGCGGAAGAAGCCTGCCTGGCGTCGGGGTTGAAAGTGCTCGCCGTGGATCATTTG
CTGCAGGTGGTGGCGCACCTGAATGGGCATCAGCCCATCGAGCCCTACAAATCCGACGGATTGCTGTATCTGAACAAACC
TTACCCGGACCTGAGCGAGGTACAGGGCCAGCTCGCCGCCAAGCGCGCACTGCTGATCGCGGCGGCGGGGGCGCATAACC
TGCTGTTAAGCGGCCCGCCCGGCACCGGCAAGACATTGCTCGCCAGTCGCCTGCCGGGTTTGTTGCCACCGCTGAGTGAG
CAGGAAGCCCTGGAAGTGGCGGCGATTCAATCGGTCGTCAGCGTGGCGCCACTCAGTCATTGGCCCCACCGACCGTTTCG
CCAGCCGCATCATTCGGCCTCGGGCCCGGCGCTGGTGGGAGGCGGGTCAAAGCCGCAACCGGGAGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTGGATGAGCTGCCGGAGTTCGACCGCAAAGTATTGGAGGTGCTGCGCGAGCCACTGGAATCA
GGGCACATCGTGATTTCCCGTGCCCGCGACCGCGTGAGCTTCCCGGCCCGTTTCCAACTGGTCGCCGCCATGAACCCCTG
CCCTTGCGGGTACCTCGGCGAACCCAGCGGACGTTGTCGCTGTACGCCGGAGCAGATCCAGCGCTATCGCAACAAGCTCT
CCGGGCCGCTGCTGGACCGCATCGACTTGCACCTCACTGTGGCGCGAGAAACCACTGCGTTGAATCCTACCCAGCAGGCA
GGCGATAACACAGCCGAGGCGTCGGCACGGGTCGCCCAGGCCCGCGATCGCCAACAGCAACGCCAAGGCTGTGCGAATGC
TTTCCTTGATCTGCCGGAGCTACGCAAGCACTGCAAGCTGGCGAAGGTCGACGAATGCTGGCTGGAAAACGCCTGTGAAC
GGCTGACGCTTTCCCTGCGCGCAGCCCATCGACTGCTCAAAGTGGCACGCACCCTAGCCGACCTTGAGCACACCGATAGC
ATCAACCGGGCGCATCTGGCGGAAGCGTTGCAGTATCGGCCCGCGGCTGTTGGCTAG

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-391)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-493)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	56.97	99.398	0.566
comM	Glaesserella parasuis strain SC1401	56.287	100	0.566
comM	Vibrio cholerae strain A1552	56.162	99.398	0.558
comM	Haemophilus influenzae Rd KW20	55.2	100	0.554
comM	Legionella pneumophila str. Paris	50.806	99.598	0.506
comM	Legionella pneumophila strain ERS1305867	50.806	99.598	0.506
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.918	100	0.474