Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSH84_RS06775 Genome accession   NZ_CP117425
Coordinates   1458562..1459626 (+) Length   354 a.a.
NCBI ID   WP_122565300.1    Uniprot ID   -
Organism   Pseudomonas beijingensis strain FP830     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1453562..1464626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH84_RS06765 (PSH84_06765) - 1454084..1455352 (+) 1269 WP_053117649.1 malic enzyme-like NAD(P)-binding protein -
  PSH84_RS06770 (PSH84_06770) - 1455909..1458356 (-) 2448 WP_122565299.1 penicillin-binding protein 1A -
  PSH84_RS06775 (PSH84_06775) comM 1458562..1459626 (+) 1065 WP_122565300.1 pilus assembly protein PilM Machinery gene
  PSH84_RS06780 (PSH84_06780) - 1459626..1460192 (+) 567 WP_122565301.1 PilN domain-containing protein -
  PSH84_RS06785 (PSH84_06785) pilO 1460189..1460812 (+) 624 WP_122565302.1 type 4a pilus biogenesis protein PilO -
  PSH84_RS06790 (PSH84_06790) - 1460809..1461339 (+) 531 WP_305469354.1 pilus assembly protein PilP -
  PSH84_RS06795 (PSH84_06795) pilQ 1461353..1463440 (+) 2088 WP_305469355.1 type IV pilus secretin PilQ Machinery gene
  PSH84_RS06800 (PSH84_06800) aroK 1463445..1463963 (+) 519 WP_122565305.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38107.75 Da        Isoelectric Point: 4.9070

>NTDB_id=784775 PSH84_RS06775 WP_122565300.1 1458562..1459626(+) (comM) [Pseudomonas beijingensis strain FP830]
MLRLFNKKAHALLGIDISSTSVKLLELSRQGERYRVESYAVEPLPANAVIEKNIAELEGVGQALSRLLAKAKTPLRSVAV
AVAGSAVITKIIEMDAGLSDDDMENQLKIEADQYIPYPLDEVAIDFEVVGVSPRSAERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERAFGLLATQLAASQERLTVAVIDIGATMTTLSVLHNGRIIYTREQLFGGRQLTDEIQRRYGLTP
EQAGLAKKQGGLPDDYLSEVLQPFREALVQQVSRSLQFFFASGQYSAVDHILLAGGTASVAGLDRLIEQRLGTPTQVANP
FTNMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=784775 PSH84_RS06775 WP_122565300.1 1458562..1459626(+) (comM) [Pseudomonas beijingensis strain FP830]
GTGCTACGACTCTTCAATAAAAAAGCCCATGCACTTCTGGGGATCGACATCAGTTCGACGTCGGTGAAGCTGCTCGAGTT
GAGTCGCCAGGGCGAGCGATACCGCGTCGAGTCCTACGCGGTCGAACCGTTGCCGGCCAATGCAGTGATCGAGAAGAACA
TCGCCGAACTCGAAGGGGTGGGCCAGGCGTTGTCGCGGCTGCTGGCCAAGGCCAAGACGCCCTTGCGTAGCGTGGCGGTG
GCCGTGGCGGGCTCGGCGGTGATCACCAAGATCATCGAGATGGACGCGGGCCTCTCCGACGACGACATGGAGAACCAGCT
CAAGATCGAGGCCGATCAATACATTCCCTATCCGCTGGATGAGGTGGCCATCGATTTCGAAGTGGTGGGCGTTTCGCCGC
GCAGCGCCGAGCGCGTCGAAGTGCTGCTGGCGGCCTGTCGCAAGGAAAACGTCGAGGTTCGCGAGGCCGCGTTGGCGCTC
GCCGGGCTGACGGCCCGGGTGGTCGATGTGGAGGCTTATGCGCTGGAGCGAGCCTTTGGCCTGCTCGCCACGCAACTGGC
CGCGTCCCAGGAGCGGCTGACGGTGGCGGTCATCGACATCGGCGCCACCATGACCACCCTCAGCGTGCTGCACAACGGGC
GCATCATCTATACCCGCGAACAATTGTTCGGCGGGCGCCAGTTGACCGATGAAATTCAGCGCCGCTACGGCCTGACACCC
GAACAGGCCGGCCTGGCAAAGAAGCAGGGTGGGTTGCCGGACGATTATCTCAGCGAAGTGCTGCAACCTTTTCGCGAGGC
CCTGGTGCAGCAGGTCTCGCGGTCCCTGCAATTTTTCTTCGCCTCGGGCCAGTACAGCGCGGTGGACCACATTCTGCTGG
CCGGGGGCACGGCGTCGGTCGCCGGCCTGGATCGGCTGATCGAGCAGCGCCTGGGCACGCCGACCCAGGTGGCCAACCCG
TTTACCAACATGGCCCTGAGCAGCAAGGTCAATGCCGGTGCCCTGGCCAGTGATGCGCCGGCGCTGATGATTGCCTGTGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.367

100

0.554
  pilM Acinetobacter baumannii D1279779

55.367

100

0.554
  comM Acinetobacter baylyi ADP1

54.52

100

0.545
  pilM Legionella pneumophila strain ERS1305867

47.458

100

0.475