Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   Q3V88_RS08040 Genome accession   NZ_CP130537
Coordinates   1673509..1674771 (-) Length   420 a.a.
NCBI ID   WP_303262425.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA12-SX     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1668509..1679771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V88_RS08015 - 1668707..1669375 (-) 669 WP_000805940.1 uroporphyrinogen-III synthase -
  Q3V88_RS08020 hemC 1669397..1670323 (-) 927 WP_001230228.1 hydroxymethylbilane synthase -
  Q3V88_RS08025 ccsA 1670365..1671180 (-) 816 WP_001157329.1 cytochrome c biogenesis protein -
  Q3V88_RS08030 hemA 1671202..1672548 (-) 1347 WP_000545451.1 glutamyl-tRNA reductase -
  Q3V88_RS08035 yihA 1672765..1673355 (-) 591 WP_000867697.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  Q3V88_RS08040 clpX 1673509..1674771 (-) 1263 WP_303262425.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  Q3V88_RS08045 tig 1674922..1676223 (-) 1302 WP_000127573.1 trigger factor -
  Q3V88_RS08050 - 1676271..1676381 (-) 111 WP_001790560.1 hypothetical protein -
  Q3V88_RS08055 - 1676386..1677315 (-) 930 WP_001280022.1 hypothetical protein -
  Q3V88_RS08060 - 1677334..1677942 (-) 609 WP_000032657.1 NUDIX domain-containing protein -
  Q3V88_RS08065 rplT 1678084..1678440 (-) 357 WP_001138360.1 50S ribosomal protein L20 -
  Q3V88_RS08070 rpmI 1678487..1678687 (-) 201 WP_001125540.1 50S ribosomal protein L35 -
  Q3V88_RS08075 infC 1678716..1679243 (-) 528 WP_001791162.1 translation initiation factor IF-3 -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46283.45 Da        Isoelectric Point: 4.2645

>NTDB_id=784776 Q3V88_RS08040 WP_303262425.1 1673509..1674771(-) (clpX) [Staphylococcus aureus strain SA12-SX]
MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAMTELPTPKEIMDHLNEYVIGQEK
AKKSLAVAVYNHYKRIQQLGSKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENIL
LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNIL
TQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEE
TEPELYDAEGNLINNSKPSA

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=784776 Q3V88_RS08040 WP_303262425.1 1673509..1674771(-) (clpX) [Staphylococcus aureus strain SA12-SX]
ATGTTTAAATTCAATGAAGATGAAGAAAATTTGAAATGCTCTTTCTGCGGAAAAGACCAAGATCAAGTAAAAAAACTTGT
AGCAGGAAGTGGTGTATATATTTGTAATGAGTGTATTGAATTATGCTCAGAAATCGTCGAAGAAGAATTAGCTCAAAACA
CTTCTGAAGCGATGACAGAATTACCTACTCCTAAAGAAATTATGGATCATTTAAACGAATATGTTATTGGTCAAGAAAAA
GCTAAAAAATCTTTAGCTGTAGCTGTTTATAACCACTATAAGCGTATTCAACAATTAGGATCAAAAGAAGATGATGTTGA
ATTACAAAAAAGTAACATTGCATTAATTGGGCCAACAGGTAGTGGTAAAACATTATTAGCTCAAACATTAGCCAAGACGT
TGAATGTACCATTTGCAATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTAGGCGATGATGTTGAAAATATCTTG
TTGAGATTAATTCAAGCAGCTGACTTTGACATTGATAAAGCCGAAAAAGGTATTATTTATGTAGATGAAATTGATAAAAT
TGCACGTAAATCTGAAAACACATCTATAACACGTGACGTTTCAGGTGAAGGTGTTCAACAAGCATTGCTTAAAATCTTAG
AAGGTACGACTGCAAGTGTTCCGCCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCAAATTGATACAACAAAT
ATCTTATTTATTCTTGGTGGTGCCTTTGATGGTATTGAAGAAGTGATTAAGCGCCGTCTTGGTGAAAAAGTTATTGGTTT
CTCAAGCAATGAAGCTGATAAATATGACGAACAAGCATTATTAGCACAAATTCGCCCAGAAGATTTGCAAGCCTATGGTT
TGATTCCTGAATTTATCGGACGTGTGCCAATTGTAGCTAATTTAGAAACATTAGATGTAACTGCGTTGAAAAACATCTTA
ACGCAACCTAAAAATGCACTTGTGAAACAATATACTAAAATGCTGGAATTAGATGATGTGGATTTAGAGTTCACTGAAGA
AGCTTTATCAGCAATTAGTGAAAAAGCAATTGAAAGAAAAACAGGTGCGCGTGGTTTACGTTCAATCATAGAAGAATCGT
TAATCGATATTATGTTTGATGTGCCTTCTAACGAAAATGTAACGAAGGTAGTTATTACAGCACAAACAATTAATGAAGAA
ACTGAACCAGAACTATACGACGCAGAAGGCAATTTAATTAATAATAGTAAACCATCAGCTTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

67

95.238

0.638
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.456

94.048

0.531