Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSH63_RS32370 Genome accession   NZ_CP117424
Coordinates   6964159..6965676 (+) Length   505 a.a.
NCBI ID   WP_024078071.1    Uniprot ID   A0A7M2J7E1
Organism   Pseudomonas sp. FP833     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6959159..6970676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH63_RS32340 (PSH63_32335) - 6959719..6960414 (+) 696 WP_024078069.1 HAD family hydrolase -
  PSH63_RS32345 (PSH63_32340) sutA 6960546..6960872 (-) 327 WP_010567186.1 transcriptional regulator SutA -
  PSH63_RS32350 (PSH63_32345) - 6960975..6961400 (-) 426 WP_017845176.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PSH63_RS32355 (PSH63_32350) - 6961612..6962949 (-) 1338 WP_024078070.1 ammonium transporter -
  PSH63_RS32360 (PSH63_32355) glnK 6962984..6963322 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PSH63_RS32365 (PSH63_32360) - 6963745..6964005 (+) 261 WP_010567183.1 accessory factor UbiK family protein -
  PSH63_RS32370 (PSH63_32365) comM 6964159..6965676 (+) 1518 WP_024078071.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PSH63_RS32375 (PSH63_32370) - 6965768..6967018 (-) 1251 WP_024078072.1 benzoate/H(+) symporter BenE family transporter -
  PSH63_RS32380 (PSH63_32375) - 6967161..6968660 (+) 1500 WP_024078073.1 PLP-dependent aminotransferase family protein -
  PSH63_RS32385 (PSH63_32380) - 6968681..6970657 (-) 1977 WP_024078074.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 53885.01 Da        Isoelectric Point: 8.2087

>NTDB_id=784770 PSH63_RS32370 WP_024078071.1 6964159..6965676(+) (comM) [Pseudomonas sp. FP833]
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHAPIEPYKSDGLLYSNKPYPDLSEVQGQLSAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYMGAPCNRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREITALNPTPQP
GGDTSTASALVAQAREHQQQRQGCANAFLDLSGLRQHCALSKPDEAWLESACERLTLSLRAAHRLLKVARTLADLERADT
IGRNHIAEALQYRPSASSQVDGANG

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=784770 PSH63_RS32370 WP_024078071.1 6964159..6965676(+) (comM) [Pseudomonas sp. FP833]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAAGCCCCTGCCGTCACCGTTGAAGTGCATATGGCCAA
CGGGTTGCCGTCGCTCACCCTGGTGGGGCTGCCAGAAACCGCGGTCAAGGAAAGCAAGGACCGCGTACGCAGTGCCATCC
TCAACTCAGCGCTGCAATATCCTTCCCGCCGTATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGTGGGCGC
TTTGATCTGGCGATCGCCCTGGGGATCCTGGCGGCGAGTGTGCAGGTGCCGGCGTTGATGCTGGATGACGTGGAGTGCCT
GGGGGAGTTGGCGTTGTCCGGCGAGGTGCGGGCGGTAAAAGGCGTATTGCCCGCCGCATTGGCGGCGCGCAAGGCCGGGC
GCACCGTGATAGTGCCGCGGGCGAATGCCGAGGAAGCGTGCCTGGCATCCGGGCTGAAGGTCATTGCCGTGGATCACCTG
CTGCAGGTGGTGGCACACCTGAATGGGCATGCACCGATTGAGCCCTACAAGTCCGACGGGTTGCTGTATTCGAACAAACC
CTACCCGGACCTGAGTGAAGTTCAGGGCCAGCTGTCAGCCAAGCGCGCACTGCTGATTGCAGCAGCGGGCGCACATAACC
TGCTGTTCAGCGGGCCACCAGGTACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGTTGCTGCCGCCATTGAGTGAA
CAGGAAGCACTGGAAGTGGCGGCGATTCAATCCGTGGTCAGCCTGGCACCGCTGAGCCATTGGCCCCACCGGCCGTTTCG
CCAGCCACACCATTCAGCCTCCGGTCCGGCACTGGTGGGCGGCGGATCGAAACCGCAGCCGGGGGAAATCACCCTGGCCC
ATCATGGAGTGCTGTTCCTGGATGAACTCCCGGAGTTTGATCGCAAGGTGCTGGAGGTCTTGCGCGAGCCACTGGAGTCG
GGGCACATCGTGATTTCCCGCGCCCGTGACCGAGTGCGCTTCCCCGCGCGTTTTCAACTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGTTATATGGGCGCGCCCTGCAACCGATGCCGTTGCACGCCCGAGCAAATCCAACGCTATCGCAACAAACTCT
CCGGGCCCTTGCTGGATCGGATCGACCTGCACTTGACGGTCGCCCGCGAAATCACCGCGCTGAACCCGACCCCACAGCCC
GGCGGCGACACATCCACCGCCTCCGCCCTGGTCGCCCAGGCTCGAGAGCATCAACAGCAGCGCCAGGGTTGCGCCAATGC
GTTCCTGGATCTCTCTGGGTTGCGCCAGCATTGCGCGCTGTCCAAGCCGGATGAAGCCTGGCTGGAAAGCGCCTGCGAGC
GCTTGACCCTGTCCCTTCGAGCCGCCCACCGCCTGCTCAAGGTCGCCCGCACTCTGGCGGACCTGGAGCGCGCAGACACT
ATCGGCCGCAACCACATTGCCGAAGCACTGCAATACCGGCCCTCGGCCTCCAGCCAAGTCGACGGCGCAAACGGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M2J7E1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.713

98.812

0.56
  comM Vibrio cholerae strain A1552

56.313

98.812

0.556
  comM Glaesserella parasuis strain SC1401

55.2

99.01

0.547
  comM Haemophilus influenzae Rd KW20

54.509

98.812

0.539
  comM Legionella pneumophila str. Paris

51.004

98.614

0.503
  comM Legionella pneumophila strain ERS1305867

51.004

98.614

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.024

99.802

0.469