Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   IL310_RS05530 Genome accession   NZ_CP117409
Coordinates   652787..653776 (+) Length   329 a.a.
NCBI ID   WP_201248244.1    Uniprot ID   -
Organism   Lactococcus lactis strain LB7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 647787..658776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS05510 (IL310_05515) - 647862..648698 (-) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -
  IL310_RS05515 (IL310_05520) - 649005..650426 (+) 1422 WP_201248247.1 NCS2 family permease -
  IL310_RS05520 (IL310_05525) - 650618..651466 (+) 849 WP_201248246.1 alpha/beta hydrolase -
  IL310_RS05525 (IL310_05530) - 651628..652713 (+) 1086 WP_201248245.1 YdcF family protein -
  IL310_RS05530 (IL310_05535) coiA 652787..653776 (+) 990 WP_201248244.1 competence protein CoiA Machinery gene
  IL310_RS05535 (IL310_05540) pepF 653839..655644 (+) 1806 WP_201248243.1 oligoendopeptidase F Regulator
  IL310_RS05540 (IL310_05545) - 655647..656330 (+) 684 WP_058203559.1 O-methyltransferase -
  IL310_RS05545 (IL310_05550) - 656484..657410 (+) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39508.13 Da        Isoelectric Point: 8.5227

>NTDB_id=784635 IL310_RS05530 WP_201248244.1 652787..653776(+) (coiA) [Lactococcus lactis strain LB7]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMTHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDKIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLIFERSFIAPLGLNLLEVFDDKIPLHKFTQIKHNINLYYENFLINFQQNSFKEVYPPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=784635 IL310_RS05530 WP_201248244.1 652787..653776(+) (coiA) [Lactococcus lactis strain LB7]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGACTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGAGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGATTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCATAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGAAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

74.847

99.088

0.742
  coiA Streptococcus pneumoniae TIGR4

43.478

97.872

0.426
  coiA Streptococcus pneumoniae Rx1

43.478

97.872

0.426
  coiA Streptococcus pneumoniae D39

43.478

97.872

0.426
  coiA Streptococcus pneumoniae R6

43.478

97.872

0.426
  coiA Streptococcus mitis NCTC 12261

42.947

96.96

0.416