Detailed information    

insolico Bioinformatically predicted

Overview


Name   pepF   Type   Regulator
Locus tag   IL310_RS05535 Genome accession   NZ_CP117409
Coordinates   653839..655644 (+) Length   601 a.a.
NCBI ID   WP_201248243.1    Uniprot ID   -
Organism   Lactococcus lactis strain LB7     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context


Location: 648839..660644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS05515 (IL310_05520) - 649005..650426 (+) 1422 WP_201248247.1 NCS2 family permease -
  IL310_RS05520 (IL310_05525) - 650618..651466 (+) 849 WP_201248246.1 alpha/beta hydrolase -
  IL310_RS05525 (IL310_05530) - 651628..652713 (+) 1086 WP_201248245.1 YdcF family protein -
  IL310_RS05530 (IL310_05535) coiA 652787..653776 (+) 990 WP_201248244.1 competence protein CoiA Machinery gene
  IL310_RS05535 (IL310_05540) pepF 653839..655644 (+) 1806 WP_201248243.1 oligoendopeptidase F Regulator
  IL310_RS05540 (IL310_05545) - 655647..656330 (+) 684 WP_058203559.1 O-methyltransferase -
  IL310_RS05545 (IL310_05550) - 656484..657410 (+) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  IL310_RS05550 (IL310_05555) alaS 657675..660293 (+) 2619 WP_201248242.1 alanine--tRNA ligase -

Sequence


Protein


Download         Length: 601 a.a.        Molecular weight: 69962.00 Da        Isoelectric Point: 4.9653

>NTDB_id=784636 IL310_RS05535 WP_201248243.1 653839..655644(+) (pepF) [Lactococcus lactis strain LB7]
MAKNRNEIPEKLTWDLTIIYKTDKEWEAELTRIKSELSLVEETDPGHLLDSAESLLIITEKMLSISQQVEKLYVYASMKN
DQDTREAKYQEYQSKATALYMKFGEVYAFYEPEFLKISKEVYNKWLGELKKLKNYDHMFERLFAKKAHILSQKEEKLLAA
AGEIFESPSETFEIFDNADIKLPMVKNESDEMIQLTHGNYSSLMESKNRGVRKAAYKALYSNYEQYQHTYAKTLQTNVKV
HNLNAQIRSYDSARQAALANNFVPEKVYDVLMEAIHQHLPLLYRYIELRKKILGITDLKMYDIYTPLSNLDYKFNYEDGV
KKAEEVLAIFGKEYKGKVKAAFEQRWIDVEENIGKRSGAYSGGSYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSAFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESKDDKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEADAAGEVLTSE
YLNSLYGEINEKYYNLAAKENPEIQYEWARIPHFYYNFYVFQYATGFAAATFLAEKVVHGSDEDRQKYLEYLKAGSSAYP
LEVIAKAGVDMESTDYLDAAFELFENRLSELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=784636 IL310_RS05535 WP_201248243.1 653839..655644(+) (pepF) [Lactococcus lactis strain LB7]
ATGGCTAAGAACAGAAATGAAATTCCTGAAAAATTAACTTGGGATTTGACAATAATTTATAAAACAGATAAAGAATGGGA
AGCAGAGCTAACTAGAATAAAAAGCGAACTTTCACTCGTTGAAGAGACAGACCCCGGTCATTTACTTGATTCAGCTGAAA
GTCTTCTGATAATTACTGAAAAAATGTTATCCATTTCTCAACAAGTTGAAAAACTATATGTTTATGCTTCAATGAAAAAT
GACCAAGATACCAGAGAGGCTAAGTATCAGGAGTATCAGTCAAAAGCAACAGCCCTCTATATGAAATTCGGAGAGGTCTA
TGCCTTCTATGAACCTGAGTTTTTGAAAATTTCAAAAGAAGTCTATAACAAATGGTTGGGGGAGCTTAAAAAATTAAAAA
ACTATGACCATATGTTTGAGCGCCTTTTTGCTAAAAAAGCTCATATTCTTAGTCAAAAAGAGGAAAAGTTATTAGCTGCG
GCTGGTGAAATTTTTGAAAGTCCTTCAGAAACTTTTGAAATTTTTGATAATGCGGATATTAAGTTACCTATGGTCAAAAA
TGAATCTGATGAGATGATCCAACTCACGCATGGAAATTACTCTTCCTTAATGGAAAGTAAGAATAGGGGAGTACGAAAAG
CAGCCTACAAAGCACTTTATAGTAATTATGAACAATATCAGCATACTTATGCAAAGACCTTACAGACTAATGTAAAAGTC
CATAATCTTAATGCCCAAATCCGCTCTTATGATTCAGCCCGTCAAGCTGCTCTGGCTAATAATTTTGTTCCAGAAAAAGT
TTACGATGTTTTGATGGAGGCCATTCATCAACATTTACCACTTTTATATCGTTATATTGAACTACGCAAGAAAATTTTAG
GAATTACTGATTTAAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTTAACTATGAAGATGGAGTG
AAAAAAGCAGAAGAAGTTTTAGCGATATTTGGTAAAGAATATAAAGGAAAAGTTAAAGCAGCTTTTGAACAAAGATGGAT
TGATGTCGAAGAAAATATCGGAAAACGTTCGGGTGCTTATTCAGGTGGATCTTATGATACCAATGCTTTTATGCTTCTAA
ATTGGCAAGAAACGTTAGATGATCTTTTTACTTTAGTTCATGAAATGGGGCACTCAATGCATAGTGCTTTCACGCGTGAA
AACCAACCATATGTTTATGGGGATTATCCAATCTTTTTAGCTGAAATTGCCTCAACTACAAATGAAAATATTTTAACCGA
AACTTTATTAAAGGAAAGTAAAGATGATAAGGAGCGATTCGCCCTTTTGAACCACTGGCTTGATAGTTTCCGTGGAACCG
TTTTCCGTCAGAGTCAATTTGCCGAATTTGAACAAAAAATTCATGAAGCAGATGCTGCCGGCGAAGTTTTAACAAGTGAA
TACTTAAACTCACTTTATGGCGAAATAAATGAAAAATACTATAATTTAGCAGCCAAAGAAAATCCAGAAATTCAGTATGA
ATGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTTTCAATACGCAACAGGTTTTGCTGCGGCAACTTTCTTAG
CTGAAAAAGTTGTTCATGGTTCAGATGAGGATCGTCAAAAATATCTTGAATATTTGAAGGCAGGTTCCTCAGCTTATCCT
TTAGAAGTAATTGCCAAAGCTGGAGTTGATATGGAATCTACCGATTATTTAGATGCCGCCTTTGAGCTTTTTGAAAATCG
ATTGAGTGAATTAGAAAAATTAGTTGAAAAAGGAGTTCATCTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.132

100

0.646