Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MTP06_RS23760 Genome accession   NZ_AP025692
Coordinates   5417992..5419605 (+) Length   537 a.a.
NCBI ID   WP_248496039.1    Uniprot ID   -
Organism   Streptomyces sp. PLM4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5412992..5424605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP06_RS23730 (MTP06_47890) lepB 5413596..5414888 (+) 1293 WP_248496035.1 signal peptidase I -
  MTP06_RS23735 (MTP06_47900) lepB 5414788..5415471 (+) 684 WP_237496840.1 signal peptidase I -
  MTP06_RS23740 (MTP06_47910) lepB 5415559..5416335 (+) 777 WP_248496037.1 signal peptidase I -
  MTP06_RS23745 (MTP06_47920) - 5416325..5416843 (+) 519 WP_003951128.1 NUDIX hydrolase -
  MTP06_RS23750 (MTP06_47930) - 5416906..5417214 (+) 309 WP_003951129.1 DUF2469 domain-containing protein -
  MTP06_RS23755 (MTP06_47940) - 5417630..5417992 (+) 363 WP_003951130.1 YraN family protein -
  MTP06_RS23760 (MTP06_47950) comM 5417992..5419605 (+) 1614 WP_248496039.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MTP06_RS23765 (MTP06_47960) dprA 5419602..5420855 (+) 1254 WP_248496041.1 DNA-processing protein DprA -
  MTP06_RS23770 (MTP06_47970) whiG 5421076..5421915 (+) 840 WP_003951133.1 RNA polymerase sigma factor WhiG -
  MTP06_RS23775 (MTP06_47980) - 5422134..5422691 (+) 558 WP_003951134.1 TetR/AcrR family transcriptional regulator -
  MTP06_RS23780 - 5422915..5423358 (-) 444 Protein_4671 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 537 a.a.        Molecular weight: 55809.97 Da        Isoelectric Point: 6.7738

>NTDB_id=78394 MTP06_RS23760 WP_248496039.1 5417992..5419605(+) (comM) [Streptomyces sp. PLM4]
MAFARTYAVTLVGVEGIIVEVQADLEPGVASFALVGLPDKTLVESRDRVRAAVANAGIEWPQRKLTIGLSPASVPKSGSG
FDLAVATAVLGAAELIDPRSLTDLVMIGELGLDGRVRPVRGVLPAVLAAAEAGYEQVVVPECSAAEAALVPGISVLGVRT
LRQLVAVLTDTPVPEEEPEAPGRPDPLLSGFSFPGAGIGALSQTVDGRRLDFGDVAGQHLARGALEVAAAGGHHIYLKGP
PGAGKTMLAERLPGIMPALDRTAALEVTAVHSVAGVLQAGGPLLSRPPYCAPHHSATMQSLVGGGNGLPRPGAVSLAHRG
VLFLDEAPEFGAKALDALRQPLESGHVVVARAAGVVRLPAQFLMVLAANPCPCGRHGTQGDPCDCMPSVVRRYQARLSGP
LLDRVDLRVDVDRVSRAELVGAGERGESTETVAARVLEARQRAEQRLAGTPWRTNGEVSGHALRTRWHAAAGAMQAAERE
LERGMLSARGLDRVLRVAWTVADLRGHDQPDAGDVEAALQLRTGIPRGVPSIAAGAR

Nucleotide


Download         Length: 1614 bp        

>NTDB_id=78394 MTP06_RS23760 WP_248496039.1 5417992..5419605(+) (comM) [Streptomyces sp. PLM4]
ATGGCCTTCGCACGGACCTACGCGGTCACCCTGGTGGGCGTCGAAGGGATCATCGTCGAGGTCCAGGCGGACCTGGAGCC
CGGCGTCGCCTCGTTCGCCCTGGTAGGGCTGCCGGACAAGACCTTGGTGGAGAGCCGGGACCGGGTACGTGCCGCGGTGG
CCAACGCCGGCATCGAGTGGCCGCAGCGGAAGCTCACCATCGGCCTCAGTCCGGCCTCGGTCCCCAAGAGCGGCAGTGGA
TTCGACCTCGCCGTCGCCACCGCCGTCCTGGGCGCGGCGGAACTCATCGATCCCCGCAGCCTCACCGACCTGGTGATGAT
CGGCGAACTGGGCCTCGACGGCCGCGTGCGGCCCGTACGCGGGGTGCTGCCGGCCGTACTGGCGGCCGCCGAGGCCGGAT
ACGAGCAGGTCGTCGTCCCGGAGTGCTCCGCTGCCGAGGCCGCCCTGGTCCCTGGCATCTCGGTGCTCGGTGTCCGCACC
CTGCGCCAGCTCGTGGCGGTGCTCACCGACACTCCCGTTCCCGAGGAGGAACCCGAGGCTCCGGGCCGTCCCGATCCGCT
CCTGTCCGGGTTCAGTTTCCCCGGCGCGGGCATCGGCGCGCTGAGTCAGACGGTGGACGGGCGGCGCCTGGACTTCGGCG
ACGTGGCTGGTCAACATCTCGCACGGGGTGCCCTGGAGGTGGCCGCGGCGGGCGGTCACCACATCTATCTGAAGGGTCCG
CCCGGGGCGGGCAAGACGATGCTTGCCGAGCGGCTCCCCGGCATCATGCCCGCCCTGGACCGCACCGCAGCCCTGGAGGT
CACCGCGGTCCACTCGGTGGCCGGAGTCCTGCAGGCGGGCGGGCCCCTGCTCAGCAGACCTCCTTACTGCGCCCCGCATC
ACTCGGCGACCATGCAGTCCCTCGTCGGAGGCGGCAACGGGCTGCCCCGCCCGGGAGCCGTCTCTCTCGCCCACAGGGGT
GTGCTTTTTCTTGACGAGGCGCCGGAGTTCGGGGCCAAGGCCCTCGACGCGCTGCGGCAGCCCCTCGAATCGGGGCACGT
CGTGGTCGCCCGCGCGGCCGGGGTCGTCCGGCTGCCCGCGCAGTTCCTCATGGTCCTGGCGGCCAACCCCTGTCCGTGCG
GCCGCCACGGCACTCAGGGCGACCCGTGCGACTGCATGCCCTCGGTCGTGCGGCGCTACCAGGCCAGGCTCTCCGGCCCG
CTCCTGGACCGGGTCGACCTCAGGGTCGACGTCGATCGCGTCTCCCGGGCCGAACTGGTCGGTGCGGGGGAGCGGGGTGA
GTCCACGGAGACCGTCGCCGCCCGGGTGCTGGAGGCCCGGCAGCGCGCGGAACAGCGCCTGGCCGGGACGCCGTGGCGAA
CCAACGGCGAGGTGTCGGGCCATGCGCTGCGCACCCGGTGGCACGCGGCGGCAGGCGCCATGCAGGCCGCCGAACGCGAA
CTGGAACGGGGCATGCTCAGCGCCCGCGGCCTCGACCGCGTATTGCGCGTGGCCTGGACCGTCGCCGACCTGAGGGGCCA
CGACCAGCCCGACGCGGGTGACGTGGAGGCGGCCCTGCAACTGCGCACCGGCATCCCCCGGGGCGTGCCCAGCATCGCGG
CAGGTGCGCGGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(426-522)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(211-418)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

37.97

99.069

0.376
  comM Vibrio cholerae O1 biovar El Tor strain E7946

38.943

95.158

0.371
  comM Vibrio cholerae strain A1552

38.943

95.158

0.371
  comM Acinetobacter baylyi ADP1

37.429

98.51

0.369
  comM Glaesserella parasuis strain SC1401

38.207

95.531

0.365
  comM Haemophilus influenzae Rd KW20

38.431

94.972

0.365
  comM Legionella pneumophila str. Paris

36.742

98.324

0.361
  comM Legionella pneumophila strain ERS1305867

36.742

98.324

0.361