Detailed information NTG0783240

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: Q3V79_RS08170
• Genome accession: NZ_CP130513
• Coordinates: 1692266..1693270 (-)
• Length: 334 a.a.
• NCBI ID: WP_001005768.1
• Uniprot ID: P66757
• Organism: Staphylococcus aureus strain SA29-SX
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1687266..1698270

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q3V79_RS08155	yajC	1689798..1690058 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
Q3V79_RS08160	tgt	1690077..1691216 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
Q3V79_RS08165	queA	1691239..1692264 (-)	1026	WP_001019178.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
Q3V79_RS08170	ruvB	1692266..1693270 (-)	1005	WP_001005768.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
Q3V79_RS08175	ruvA	1693302..1693904 (-)	603	WP_000271550.1	Holliday junction branch migration protein RuvA	Machinery gene
Q3V79_RS08180	-	1693918..1694373 (-)	456	WP_000368902.1	ACT domain-containing protein	-
Q3V79_RS08185	obgE	1694386..1695678 (-)	1293	WP_000496100.1	GTPase ObgE	-
Q3V79_RS08190	rpmA	1696032..1696316 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
Q3V79_RS08195	-	1696328..1696648 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
Q3V79_RS08200	rplU	1696654..1696962 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
Q3V79_RS08205	mreD	1697324..1697854 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37645.94 Da
• Isoelectric Point: 5.1876

>NTDB_id=783240 Q3V79_RS08170 WP_001005768.1 1692266..1693270(-) (ruvB) [Staphylococcus aureus strain SA29-SX]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERG

Nucleotide

• Length: 1005 bp

>NTDB_id=783240 Q3V79_RS08170 WP_001005768.1 1692266..1693270(-) (ruvB) [Staphylococcus aureus strain SA29-SX]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
ATTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGGATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: P66757

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515