Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   Q3V79_RS08175 Genome accession   NZ_CP130513
Coordinates   1693302..1693904 (-) Length   200 a.a.
NCBI ID   WP_000271550.1    Uniprot ID   P66748
Organism   Staphylococcus aureus strain SA29-SX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1688302..1698904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V79_RS08155 yajC 1689798..1690058 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  Q3V79_RS08160 tgt 1690077..1691216 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  Q3V79_RS08165 queA 1691239..1692264 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  Q3V79_RS08170 ruvB 1692266..1693270 (-) 1005 WP_001005768.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  Q3V79_RS08175 ruvA 1693302..1693904 (-) 603 WP_000271550.1 Holliday junction branch migration protein RuvA Machinery gene
  Q3V79_RS08180 - 1693918..1694373 (-) 456 WP_000368902.1 ACT domain-containing protein -
  Q3V79_RS08185 obgE 1694386..1695678 (-) 1293 WP_000496100.1 GTPase ObgE -
  Q3V79_RS08190 rpmA 1696032..1696316 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  Q3V79_RS08195 - 1696328..1696648 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  Q3V79_RS08200 rplU 1696654..1696962 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  Q3V79_RS08205 mreD 1697324..1697854 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  Q3V79_RS08210 mreC 1697854..1698696 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22281.50 Da        Isoelectric Point: 6.1244

>NTDB_id=783241 Q3V79_RS08175 WP_000271550.1 1693302..1693904(-) (ruvA) [Staphylococcus aureus strain SA29-SX]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIRTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=783241 Q3V79_RS08175 WP_000271550.1 1693302..1693904(-) (ruvA) [Staphylococcus aureus strain SA29-SX]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCGTACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66748

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

43.216

99.5

0.43