Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PO881_RS18515 Genome accession   NZ_CP117199
Coordinates   4002733..4004253 (+) Length   506 a.a.
NCBI ID   WP_280172200.1    Uniprot ID   -
Organism   Pantoea sp. SS70     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3997733..4009253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO881_RS18495 (PO881_18495) - 3999308..4000237 (-) 930 WP_007888821.1 branched-chain amino acid transaminase -
  PO881_RS18500 (PO881_18500) ilvM 4000256..4000513 (-) 258 WP_101762784.1 acetolactate synthase 2 small subunit -
  PO881_RS18505 (PO881_18505) ilvG 4000510..4002156 (-) 1647 WP_271461144.1 acetolactate synthase 2 catalytic subunit -
  PO881_RS18510 (PO881_18510) ilvL 4002306..4002404 (-) 99 WP_071531048.1 ilv operon leader peptide -
  PO881_RS18515 (PO881_18515) comM 4002733..4004253 (+) 1521 WP_280172200.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PO881_RS18520 (PO881_18520) - 4004284..4004622 (-) 339 WP_008106616.1 DUF413 domain-containing protein -
  PO881_RS18525 (PO881_18525) hdfR 4004744..4005565 (+) 822 WP_280172201.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55185.40 Da        Isoelectric Point: 7.8969

>NTDB_id=782823 PO881_RS18515 WP_280172200.1 4002733..4004253(+) (comM) [Pantoea sp. SS70]
MSLSKVLTRAALGVQAPLVTVEVHISNGLPALTLVGLPETTVKEARERVRSAIINSGFTFPAKRVTINLAPADLPKEGGR
YDLPIAIAILAASEQLPDAKLGQFEFLGELALNGALCGVQAAIPAAMAALQAGRQMVLAEQNQQDVGLIQQGETLFGKHL
VEICAFLHNKTTLTVAHYQPETLEQEKQDLSDIIGQDQGRRALEITAAGGHNLLLIGPPGTGKTMLATRLPGIMPPLDDQ
EALECAAIASLVSSGNLHHQWRKRPFRAPHHSSSLYALVGGGSLPRPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GEIAISRTRAKVTYPARFQLIGAMNPSPTGHYQGNHNRSSPQQVLRYLNRLSGPFLDRFDLSLEVPLLPSGSLSKKQQVS
ESSAEVLTRVLAARKIQTARSGKVNAHLSNPEILRWCPLKQQDAEWLEEVLNSLGLSVRAWQRILKVARTIADLAGEEQI
TRSHLQEAVGYRSIDRLMIYLHKTLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=782823 PO881_RS18515 WP_280172200.1 4002733..4004253(+) (comM) [Pantoea sp. SS70]
ATGTCTTTATCGAAGGTATTAACACGAGCTGCGCTGGGTGTTCAGGCTCCGCTGGTGACGGTGGAAGTGCACATCAGCAA
CGGCTTGCCGGCCCTGACGCTGGTTGGACTGCCTGAAACCACGGTAAAAGAAGCGCGGGAACGGGTGCGAAGCGCGATTA
TTAATAGCGGGTTCACCTTCCCGGCGAAACGCGTCACCATCAATCTGGCGCCTGCCGATCTGCCAAAAGAGGGCGGACGC
TATGACCTCCCCATCGCTATCGCCATTCTGGCGGCCTCTGAGCAGCTGCCAGACGCAAAACTGGGGCAATTTGAATTCCT
GGGGGAGTTAGCACTTAACGGCGCGCTCTGTGGCGTTCAGGCCGCTATTCCAGCTGCGATGGCGGCACTGCAAGCAGGCA
GACAAATGGTGTTAGCTGAACAGAATCAACAGGATGTAGGGTTGATTCAACAAGGCGAGACGCTGTTTGGCAAACATCTG
GTAGAAATCTGTGCGTTTCTCCATAACAAAACCACTCTCACTGTCGCGCATTATCAGCCCGAAACGCTTGAACAGGAAAA
GCAGGACCTCAGCGATATCATTGGCCAGGATCAGGGCCGACGTGCACTGGAGATCACCGCAGCTGGCGGGCATAACCTAT
TACTGATTGGGCCGCCTGGCACCGGCAAAACCATGTTAGCGACGCGTCTGCCCGGTATCATGCCACCGTTAGACGACCAG
GAAGCGCTGGAGTGCGCCGCTATCGCCAGTCTGGTAAGCAGTGGCAATCTCCATCATCAGTGGCGCAAACGGCCGTTCAG
AGCGCCTCATCACAGTTCATCACTCTATGCGCTGGTTGGGGGCGGCTCCTTGCCGCGGCCGGGAGAAATCTCCTTGGCAC
ACAATGGCGTGTTATTCCTCGATGAGCTGCCAGAATTCGAGCGCAGAACGCTTGATGCTTTGCGCGAACCGATTGAATCC
GGGGAAATCGCCATTTCACGCACGCGCGCTAAAGTGACGTATCCCGCGCGCTTTCAATTGATCGGCGCGATGAATCCCAG
CCCGACCGGGCATTATCAGGGCAACCATAATCGCTCATCACCTCAGCAGGTGTTGCGCTATCTCAATCGGTTATCAGGAC
CTTTTCTCGATCGCTTTGATTTATCGTTAGAGGTCCCACTTCTGCCCAGTGGATCGCTAAGTAAGAAACAACAAGTCAGC
GAAAGCAGCGCTGAAGTTTTAACTCGCGTCCTCGCCGCACGAAAGATTCAAACAGCACGCAGCGGAAAAGTGAATGCTCA
TCTCTCTAACCCAGAGATTTTACGCTGGTGTCCATTGAAGCAACAGGATGCTGAATGGCTGGAAGAAGTGTTGAATTCGT
TGGGGCTTTCAGTACGCGCCTGGCAGCGGATTTTAAAGGTGGCCAGGACAATCGCTGATTTAGCAGGTGAAGAGCAGATT
ACTCGTAGTCATTTGCAGGAAGCGGTGGGATATCGCAGCATCGACCGCTTAATGATCTATCTGCACAAGACTCTGGAATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.474

100

0.605
  comM Vibrio cholerae strain A1552

60.558

99.209

0.601
  comM Glaesserella parasuis strain SC1401

60.04

99.407

0.597
  comM Vibrio campbellii strain DS40M4

59.761

99.209

0.593
  comM Legionella pneumophila str. Paris

46.68

98.221

0.458
  comM Legionella pneumophila strain ERS1305867

46.68

98.221

0.458
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.249

100

0.437