Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M9D40_RS09125 Genome accession   NZ_CP117196
Coordinates   1922334..1923863 (-) Length   509 a.a.
NCBI ID   WP_170353002.1    Uniprot ID   -
Organism   Pasteurella multocida strain P2237     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1917334..1928863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9D40_RS09110 (M9D40_009110) - 1917614..1918456 (+) 843 WP_014668440.1 divergent polysaccharide deacetylase family protein -
  M9D40_RS09115 (M9D40_009115) - 1918477..1919163 (+) 687 WP_005757690.1 hypothetical protein -
  M9D40_RS09120 (M9D40_009120) - 1919271..1921826 (-) 2556 WP_252759444.1 TonB-dependent receptor -
  M9D40_RS09125 (M9D40_009125) comM 1922334..1923863 (-) 1530 WP_170353002.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M9D40_RS09130 (M9D40_009130) yihA 1923971..1924588 (-) 618 WP_005724253.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  M9D40_RS09135 (M9D40_009135) - 1924699..1925568 (+) 870 WP_170353000.1 VirK/YbjX family protein -
  M9D40_RS09140 (M9D40_009140) trmL 1925642..1926118 (-) 477 WP_170352998.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  M9D40_RS09145 (M9D40_009145) - 1926276..1926602 (+) 327 WP_005725755.1 type II toxin-antitoxin system RelE/ParE family toxin -
  M9D40_RS09150 (M9D40_009150) - 1926682..1927008 (+) 327 WP_005757699.1 HigA family addiction module antitoxin -
  M9D40_RS09155 (M9D40_009155) - 1927063..1928583 (-) 1521 WP_170352996.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55990.38 Da        Isoelectric Point: 9.7617

>NTDB_id=782727 M9D40_RS09125 WP_170353002.1 1922334..1923863(-) (comM) [Pasteurella multocida strain P2237]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSQQDTYFAQHL
LEVVNFLNDHSTLPLASDLPTQHDPALLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLIHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQYHLAEALGYRAMDRLLQKLSAI

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=782727 M9D40_RS09125 WP_170353002.1 1922334..1923863(-) (comM) [Pasteurella multocida strain P2237]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAAACCGTCAAAGAAGCACAAGATCGCGTACGCAGTGCCTTGC
TCAATGCTCAATTTAAATACCCTGCTAAACGGATCACGGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGACCCACAAAAGTTACAGCAATTTGAATTTGT
GGGTGAGTTAGCACTAACTGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATCATCGCCAGTCAAAATGCCAATGAAGCCTCGTTAGTTTCCCAGCAAGACACCTATTTTGCGCAACATTTA
TTAGAAGTCGTCAATTTCCTCAATGATCATTCCACGTTACCTTTAGCCTCAGACCTGCCTACACAACATGATCCAGCCCT
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCTAAACGCGCCTTAACCATTGCTGCCGCAG
GACAACATAATCTGCTTTTTTTGGGTCCGCCCGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCG
GAAATGAACGATCAAGAAGCCATTGAAACCGCCGCAGTGACAAGCCTTATTCATCATGAATTGAATTTTCATAATTGGAA
ACAACGCCCATTTCGTGCCCCTCATCACAGCGCTTCAACACCAGCTTTAGTAGGGGGCGGCACCATACCCAAACCCGGTG
AAATTTCGCTCGCACACAATGGGGTGTTATTTCTCGATGAGTTACCAGAATTTGAACGTAAAGTATTAGATGCCTTACGT
CAACCTTTGGAAAGTGGTGAAATTATCATTTCGCGTGCCAATGCAAAAATTCAATTTCCTGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACAGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTGCGTTATCTCA
ATCGCTTATCCGGTCCGTTTTTAGATCGCTTTGATTTGTCAATCGAAGTCCCTTTACTACCCAAAGGCGCGTTACAACAG
CAAACGGATCGGGGCGAAAGTAGCGCACAAGTGAGGGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGAGCGGG
GAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAAA
ATGCCTTAGCTAAATTGGGGTTATCCGTGCGCGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAAT
AATGAACGCCAAATTCAACAATATCACCTCGCCGAAGCACTGGGTTATCGGGCGATGGATAGGCTGTTACAGAAGTTATC
TGCAATATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.418

99.607

0.841
  comM Glaesserella parasuis strain SC1401

77.712

99.607

0.774
  comM Vibrio cholerae strain A1552

66.208

100

0.662
  comM Vibrio campbellii strain DS40M4

65.748

99.804

0.656
  comM Legionella pneumophila str. Paris

51.6

98.232

0.507
  comM Legionella pneumophila strain ERS1305867

51.6

98.232

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.524

100

0.47