Detailed information NTG0782456

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: PQ615_RS08305
• Genome accession: NZ_CP117058
• Coordinates: 1755763..1756212 (-)
• Length: 149 a.a.
• NCBI ID: WP_119773875.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain LSSM211007SI
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1750763..1761212

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PQ615_RS08270 (PQ615_08270)	proC	1750889..1751659 (+)	771	WP_003098824.1	pyrroline-5-carboxylate reductase	-
PQ615_RS08275 (PQ615_08275)	-	1751693..1752349 (-)	657	WP_003098822.1	CPBP family intramembrane glutamic endopeptidase	-
PQ615_RS08280 (PQ615_08280)	-	1752359..1752811 (-)	453	WP_003098820.1	hypothetical protein	-
PQ615_RS08285 (PQ615_08285)	-	1752824..1753027 (-)	204	WP_003098819.1	helix-turn-helix transcriptional regulator	-
PQ615_RS08290 (PQ615_08290)	-	1753149..1754345 (-)	1197	WP_003098816.1	acetate kinase	-
PQ615_RS08295 (PQ615_08295)	comYH	1754402..1755358 (-)	957	WP_003098815.1	class I SAM-dependent methyltransferase	Machinery gene
PQ615_RS08300 (PQ615_08300)	comGG	1755420..1755773 (-)	354	WP_003098812.1	competence type IV pilus minor pilin ComGG	-
PQ615_RS08305 (PQ615_08305)	comYF	1755763..1756212 (-)	450	WP_119773875.1	competence type IV pilus minor pilin ComGF	Machinery gene
PQ615_RS08310 (PQ615_08310)	comGE	1756172..1756465 (-)	294	WP_031239176.1	competence type IV pilus minor pilin ComGE	-
PQ615_RS08315 (PQ615_08315)	comGD	1756437..1756865 (-)	429	WP_003098807.1	competence type IV pilus minor pilin ComGD	-
PQ615_RS08320 (PQ615_08320)	comGC/cglC	1756825..1757151 (-)	327	WP_003098806.1	competence type IV pilus major pilin ComGC	Machinery gene
PQ615_RS08325 (PQ615_08325)	comYB	1757152..1758168 (-)	1017	WP_003098804.1	competence type IV pilus assembly protein ComGB	Machinery gene
PQ615_RS08330 (PQ615_08330)	comYA	1758119..1759060 (-)	942	WP_003098801.1	competence type IV pilus ATPase ComGA	Machinery gene
PQ615_RS08335 (PQ615_08335)	-	1759121..1759486 (-)	366	WP_003098799.1	DUF1033 family protein	-

Sequence

Protein

• Length: 149 a.a.
• Molecular weight: 16976.98 Da
• Isoelectric Point: 10.2834

>NTDB_id=782456 PQ615_RS08305 WP_119773875.1 1755763..1756212(-) (comYF) [Streptococcus iniae strain LSSM211007SI]
MKSIKKSLALRKISLKAFTLLECMLALVILSGAILVYQGMTKSLFFNMSYLVENDQDKWLLFSQQLRAELTGARFEKVEN
NKLYVAKEGKQIAFGLSKQGDFRKTAANGHGYHPMLLDLKDAKISHHNKEITVSITWKSGLERVFLYAF

Nucleotide

• Length: 450 bp

>NTDB_id=782456 PQ615_RS08305 WP_119773875.1 1755763..1756212(-) (comYF) [Streptococcus iniae strain LSSM211007SI]
GTGAAAAGCATCAAAAAGTCTTTAGCCTTAAGAAAAATTAGCCTCAAGGCATTTACGCTTTTAGAGTGTATGTTGGCCTT
AGTGATATTGTCAGGTGCCATCTTAGTTTATCAAGGAATGACAAAATCTTTATTTTTTAACATGTCTTATTTGGTTGAAA
ATGATCAGGACAAGTGGTTGTTGTTTTCACAACAGTTGAGAGCTGAGTTAACAGGAGCTCGGTTTGAGAAGGTCGAAAAT
AATAAACTTTACGTAGCAAAAGAAGGAAAGCAGATAGCTTTTGGACTTTCAAAACAAGGAGATTTTCGAAAAACAGCAGC
AAATGGTCATGGTTATCATCCCATGCTTCTGGATCTTAAAGATGCTAAGATTAGTCATCATAATAAGGAGATTACAGTAA
GTATCACTTGGAAAAGTGGGCTAGAAAGAGTCTTTCTTTATGCTTTTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (53-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	52.174	92.617	0.483
comYF	Streptococcus mutans UA159	51.449	92.617	0.477
comGF/cglF	Streptococcus pneumoniae D39	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae Rx1	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae R6	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae TIGR4	46.617	89.262	0.416
comGF/cglF	Streptococcus mitis NCTC 12261	45.865	89.262	0.409
comGF	Lactococcus lactis subsp. cremoris KW2	43.478	92.617	0.403
comGF/cglF	Streptococcus mitis SK321	44.361	89.262	0.396