Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   PQ615_RS08295 Genome accession   NZ_CP117058
Coordinates   1754402..1755358 (-) Length   318 a.a.
NCBI ID   WP_003098815.1    Uniprot ID   -
Organism   Streptococcus iniae strain LSSM211007SI     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1749402..1760358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ615_RS08265 (PQ615_08265) pepA 1749798..1750865 (+) 1068 WP_003098826.1 glutamyl aminopeptidase -
  PQ615_RS08270 (PQ615_08270) proC 1750889..1751659 (+) 771 WP_003098824.1 pyrroline-5-carboxylate reductase -
  PQ615_RS08275 (PQ615_08275) - 1751693..1752349 (-) 657 WP_003098822.1 CPBP family intramembrane glutamic endopeptidase -
  PQ615_RS08280 (PQ615_08280) - 1752359..1752811 (-) 453 WP_003098820.1 hypothetical protein -
  PQ615_RS08285 (PQ615_08285) - 1752824..1753027 (-) 204 WP_003098819.1 helix-turn-helix transcriptional regulator -
  PQ615_RS08290 (PQ615_08290) - 1753149..1754345 (-) 1197 WP_003098816.1 acetate kinase -
  PQ615_RS08295 (PQ615_08295) comYH 1754402..1755358 (-) 957 WP_003098815.1 class I SAM-dependent methyltransferase Machinery gene
  PQ615_RS08300 (PQ615_08300) comGG 1755420..1755773 (-) 354 WP_003098812.1 competence type IV pilus minor pilin ComGG -
  PQ615_RS08305 (PQ615_08305) comYF 1755763..1756212 (-) 450 WP_119773875.1 competence type IV pilus minor pilin ComGF Machinery gene
  PQ615_RS08310 (PQ615_08310) comGE 1756172..1756465 (-) 294 WP_031239176.1 competence type IV pilus minor pilin ComGE -
  PQ615_RS08315 (PQ615_08315) comGD 1756437..1756865 (-) 429 WP_003098807.1 competence type IV pilus minor pilin ComGD -
  PQ615_RS08320 (PQ615_08320) comGC/cglC 1756825..1757151 (-) 327 WP_003098806.1 competence type IV pilus major pilin ComGC Machinery gene
  PQ615_RS08325 (PQ615_08325) comYB 1757152..1758168 (-) 1017 WP_003098804.1 competence type IV pilus assembly protein ComGB Machinery gene
  PQ615_RS08330 (PQ615_08330) comYA 1758119..1759060 (-) 942 WP_003098801.1 competence type IV pilus ATPase ComGA Machinery gene
  PQ615_RS08335 (PQ615_08335) - 1759121..1759486 (-) 366 WP_003098799.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35968.86 Da        Isoelectric Point: 4.5568

>NTDB_id=782455 PQ615_RS08295 WP_003098815.1 1754402..1755358(-) (comYH) [Streptococcus iniae strain LSSM211007SI]
MNFENIEKAFELILENSQLIENELKTHIYDALIEQNSFYLGAEGASEQVAKNNEVLRSLNLSKEEWRRAFQFIFIKVGQT
EKLQANHQFTPDSLGFLILFLIETLTQEDSLDILEIGSGTGNLAQTLLNNSGKQLDYLGIEVDDLLIDLSASIAEIMNST
ARFVQEDAVRPQILKESHIIISDLPVGYYPNDEIASRYQVASPDGHTYAHHLLMEQALKYLKQDGFAIFLAPASLLQSQQ
SHLLKEWLKGYAQLSAVITLPETFFGDPSVAKSLIVLQKQSDKKGETFVYPLTDLQSADKVRLFMENFKKWKADNVFS

Nucleotide


Download         Length: 957 bp        

>NTDB_id=782455 PQ615_RS08295 WP_003098815.1 1754402..1755358(-) (comYH) [Streptococcus iniae strain LSSM211007SI]
ATGAATTTTGAAAATATTGAGAAAGCTTTTGAGCTTATTTTAGAAAATAGTCAACTTATTGAAAATGAGTTGAAAACGCA
CATTTATGATGCCCTTATTGAGCAGAATTCTTTTTATTTGGGAGCTGAAGGTGCTAGTGAGCAGGTCGCTAAAAACAATG
AAGTTTTAAGGTCACTCAATTTAAGTAAAGAAGAGTGGCGTCGCGCTTTTCAGTTTATTTTTATCAAGGTTGGTCAAACA
GAAAAACTGCAGGCGAATCACCAATTTACACCAGATAGTCTAGGTTTCCTTATTTTATTTTTAATTGAAACCTTGACACA
AGAAGACTCTCTTGACATTTTAGAGATTGGCAGTGGGACAGGTAATCTAGCACAAACACTTTTGAATAATAGTGGTAAAC
AATTAGATTACTTAGGTATTGAAGTGGACGATTTACTCATTGATTTATCAGCTAGTATAGCTGAGATAATGAATTCGACA
GCACGTTTTGTTCAAGAAGATGCCGTTAGACCACAAATTTTGAAAGAAAGTCATATTATTATCAGTGATTTACCAGTAGG
TTATTATCCTAATGATGAGATTGCTAGTCGTTATCAGGTTGCAAGTCCAGATGGTCATACCTATGCCCATCACTTATTGA
TGGAACAGGCTTTGAAATATTTAAAACAAGATGGCTTTGCAATTTTCTTAGCACCAGCCAGTCTTTTGCAAAGTCAACAA
AGCCATCTCCTTAAAGAGTGGTTAAAAGGTTATGCTCAGTTATCTGCAGTGATTACCTTGCCAGAAACATTCTTTGGAGA
TCCATCCGTGGCTAAATCACTGATTGTTCTGCAAAAGCAGAGTGACAAAAAAGGAGAAACCTTTGTTTATCCATTGACTG
ATTTACAGTCTGCAGATAAGGTTCGTCTCTTCATGGAGAACTTCAAAAAATGGAAAGCTGATAATGTCTTTTCATGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

67.192

99.686

0.67
  comYH Streptococcus mutans UA140

66.877

99.686

0.667