Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   PQ615_RS01805 Genome accession   NZ_CP117058
Coordinates   382804..384783 (+) Length   659 a.a.
NCBI ID   WP_304482264.1    Uniprot ID   -
Organism   Streptococcus iniae strain LSSM211007SI     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 377804..389783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ615_RS01790 (PQ615_01790) - 378769..379880 (+) 1112 WP_089180045.1 IS3-like element IS981 family transposase -
  PQ615_RS01795 (PQ615_01795) pbp3 379972..381180 (-) 1209 WP_017794608.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  PQ615_RS01800 (PQ615_01800) pbp3 381249..382487 (-) 1239 WP_003100860.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  PQ615_RS01805 (PQ615_01805) amiA3 382804..384783 (+) 1980 WP_304482264.1 peptide ABC transporter substrate-binding protein Regulator
  PQ615_RS01810 (PQ615_01810) amiC 384848..386347 (+) 1500 WP_003100862.1 ABC transporter permease Regulator
  PQ615_RS01815 (PQ615_01815) amiD 386347..387273 (+) 927 WP_003100863.1 oligopeptide ABC transporter permease OppC Regulator
  PQ615_RS01820 (PQ615_01820) amiE 387279..388349 (+) 1071 WP_031239151.1 ABC transporter ATP-binding protein Regulator
  PQ615_RS01825 (PQ615_01825) amiF 388342..389265 (+) 924 WP_003100865.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73192.70 Da        Isoelectric Point: 6.2982

>NTDB_id=782421 PQ615_RS01805 WP_304482264.1 382804..384783(+) (amiA3) [Streptococcus iniae strain LSSM211007SI]
MKKGQWLAVAGVTILSVSALAACGNNSSKASKGSTYSYVYTSDPDTLDYLVSGRSSTTEITQQGIDGLMEYDRFGNVIPS
LAKDWTVSKDGLTYTYKLRDDVKWYTADGEEYANVTAKDFVAGIKHAADKNSDALYLIQDSIKGLSDYVSGKNKDFSQVG
VKAVDKHTIQYTLNQPESYWNSKLTYGVLAPVNAEFLKSQGKNFGKASDAGSILYNGPFIITALTSKSSIEFVKNDHYWD
KKNVNVEAVQLTYYDGQDQESLFRNFDDGAYSVARLFPTTPSYKTAKKKYGESITYGQQNSTTYYATFNLNRTAYKHTKK
TDDKQKDDTKKAILNKDFRQALTFGFDRMSYQAQSAGQDAANKSLRNVLIPPTFVQINGEDFGKTVEKDLSAYGEQWKGI
NLADAQDGLYNPEKAKAQIAKAKTELEAQGVQFPIHIDFPQDQTATVLMQQAQSMKQSIEATLGKENVVIDILEVPTDTY
NNISYLAETPAQQDWDMSTASGWSPDFTDPSSYLDIFNPNLENAQTKFIGIEPLKNSDVVTAAGLDEFTQLVTDAGKITD
DQTKRYEAYAKAQAALTDSAVYIPTISLGGTPTVSKLVPFSGAFGWAGNKSNNLYYKYIKLQDKPVTAKQYAKALDKWKK
EKEKSNKKYADSLEKHIEK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=782421 PQ615_RS01805 WP_304482264.1 382804..384783(+) (amiA3) [Streptococcus iniae strain LSSM211007SI]
ATGAAAAAAGGGCAATGGCTTGCGGTGGCAGGTGTCACTATTTTATCGGTCTCTGCCTTAGCGGCTTGCGGAAACAACTC
AAGTAAAGCGAGCAAAGGATCTACTTATAGTTATGTTTATACAAGTGACCCAGATACGTTGGATTACTTAGTATCTGGTC
GTTCATCAACAACTGAAATCACCCAACAAGGGATTGATGGCTTGATGGAGTATGATCGTTTTGGAAATGTTATTCCTTCA
CTTGCTAAAGATTGGACAGTTTCAAAAGATGGTCTGACTTATACTTATAAACTGCGTGATGATGTCAAATGGTATACAGC
TGATGGCGAAGAATATGCAAATGTTACTGCAAAGGACTTTGTGGCTGGAATCAAACATGCGGCAGATAAAAACTCAGACG
CCCTTTACCTCATCCAAGATTCAATCAAAGGCTTATCCGACTATGTCAGTGGTAAGAACAAAGACTTCTCACAAGTAGGT
GTTAAGGCTGTTGATAAGCATACCATTCAATACACTTTAAACCAACCCGAATCTTATTGGAATTCTAAGTTGACCTACGG
CGTTTTGGCACCTGTAAATGCAGAGTTCTTGAAATCACAAGGTAAAAACTTTGGTAAAGCATCAGATGCAGGTTCAATCC
TTTACAATGGACCATTTATCATCACTGCTCTAACAAGTAAATCATCAATTGAATTTGTTAAAAATGATCATTATTGGGAC
AAGAAAAATGTTAACGTTGAGGCTGTTCAATTAACTTACTACGATGGTCAAGACCAAGAATCACTCTTTAGAAACTTTGA
CGATGGTGCTTATTCAGTCGCACGGTTGTTCCCAACAACGCCATCTTACAAGACTGCTAAGAAAAAATATGGTGAAAGCA
TTACTTATGGTCAACAAAATTCAACGACCTATTATGCAACGTTTAATTTAAACCGTACAGCCTACAAACATACAAAGAAA
ACTGACGATAAACAAAAAGATGATACTAAAAAAGCCATCCTAAACAAAGATTTCCGTCAAGCTTTAACCTTTGGTTTTGA
TAGAATGTCTTACCAAGCACAATCTGCTGGGCAAGATGCTGCTAACAAATCATTGAGAAATGTTTTGATACCGCCTACTT
TTGTTCAAATTAATGGTGAAGATTTTGGGAAGACCGTTGAAAAGGATTTATCGGCTTATGGGGAGCAATGGAAAGGCATT
AATTTAGCAGATGCCCAAGATGGCCTTTATAACCCAGAAAAAGCAAAAGCGCAAATAGCAAAAGCAAAAACTGAATTGGA
AGCTCAAGGTGTTCAATTCCCAATTCACATCGACTTCCCACAAGACCAAACAGCAACAGTCTTGATGCAACAAGCCCAAT
CAATGAAACAATCTATTGAAGCAACATTAGGTAAAGAAAATGTTGTTATTGATATTCTTGAAGTTCCAACAGATACTTAC
AATAACATTTCATATTTAGCTGAAACACCAGCTCAACAGGATTGGGACATGTCAACAGCATCTGGTTGGAGTCCGGACTT
TACTGATCCCTCATCATATCTTGACATCTTTAATCCAAATCTTGAAAATGCGCAAACCAAGTTTATTGGTATTGAACCAT
TGAAAAATTCAGATGTTGTTACAGCGGCAGGTTTAGATGAGTTTACACAGTTAGTTACTGATGCAGGTAAAATCACTGAT
GATCAAACAAAACGTTACGAAGCTTATGCAAAAGCGCAAGCAGCACTTACAGATTCAGCAGTTTATATTCCAACAATCAG
TCTAGGTGGAACTCCAACGGTTTCAAAACTTGTTCCATTTAGTGGAGCCTTTGGTTGGGCAGGAAATAAATCTAATAATC
TTTATTACAAATATATTAAATTACAGGATAAACCTGTTACTGCCAAACAATATGCTAAAGCTTTAGACAAATGGAAAAAA
GAAAAAGAAAAATCAAATAAAAAATATGCGGATTCCCTTGAAAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

52.879

100

0.53
  amiA3 Streptococcus thermophilus LMD-9

52.727

100

0.528
  amiA Streptococcus salivarius strain HSISS4

52.352

100

0.524