Detailed information NTG0782425

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: PQ615_RS01825
• Genome accession: NZ_CP117058
• Coordinates: 388342..389265 (+)
• Length: 307 a.a.
• NCBI ID: WP_003100865.1
• Uniprot ID: A0A1J0MXR1
• Organism: Streptococcus iniae strain LSSM211007SI
• Function: internalize XIP (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	389730..390533	388342..389265	flank	465

Gene organization within MGE regions

Location: 388342..390533

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PQ615_RS01825 (PQ615_01825)	amiF	388342..389265 (+)	924	WP_003100865.1	ATP-binding cassette domain-containing protein	Regulator

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34669.87 Da
• Isoelectric Point: 5.9503

>NTDB_id=782425 PQ615_RS01825 WP_003100865.1 388342..389265(+) (amiF) [Streptococcus iniae strain LSSM211007SI]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSSGEIVYDGKVINGKKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKNEAERQEKIKNMMTEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMDPEFIIADEPISALDVSVRAQVLNLLKKMQKEKNLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFI
NPIHPYTKSLLSAVPIPDPILERQKKLVVYSVDQHDYSVDEPEMVEIKPGHFVWANKTEVEEYKRDL

Nucleotide

• Length: 924 bp

>NTDB_id=782425 PQ615_RS01825 WP_003100865.1 388342..389265(+) (amiF) [Streptococcus iniae strain LSSM211007SI]
ATGTCTGAGAAATTAGTTGAAGTCAAAGACTTAGAAATTTCCTTCGGTGAAGGAAAGAAAAAATTTGTTGCTGTTAAAAA
TGCAAACTTCTTTATTAATAAAGGAGAAACGTTCTCTCTTGTTGGAGAATCAGGAAGTGGAAAAACCACCATTGGACGTG
CTATCATTGGCTTAAATGATACTAGTTCTGGTGAAATTGTCTATGATGGCAAGGTTATTAATGGTAAAAAAAGCAAATCA
GAAGCTAATGAATTAATTCGAAAAATTCAAATGATTTTCCAAGATCCAGCAGCAAGTTTGAATGAACGTGCTACGGTTGA
CTATATTATTTCTGAAGGTCTTTATAACTTTAATCTCTTCAAAAATGAAGCAGAGCGTCAAGAAAAGATTAAAAATATGA
TGACAGAAGTGGGATTACTGGCAGAACATTTGACACGTTATCCCCATGAATTTTCTGGAGGTCAACGTCAACGTATTGGA
ATTGCACGGGCTTTGGTCATGGATCCAGAATTTATTATTGCTGATGAGCCAATTTCTGCATTGGATGTTTCTGTACGAGC
TCAAGTTTTAAATTTGCTTAAAAAAATGCAAAAAGAGAAGAACTTGACCTATCTTTTTATTGCTCATGATTTATCAGTTG
TTCGTTTCATCTCGGATCGGATTGCTGTTATCCATAAAGGGGTTATTGTTGAGGTTGCTGAAACAGAAGAACTTTTCATT
AATCCAATCCATCCATACACCAAATCACTCCTATCTGCGGTCCCAATTCCAGATCCAATTTTGGAAAGACAAAAGAAATT
AGTGGTTTACAGTGTTGATCAACACGATTATTCCGTCGATGAACCTGAAATGGTTGAAATCAAACCAGGGCACTTTGTTT
GGGCAAATAAAACTGAAGTAGAAGAATACAAAAGAGACTTATAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (25-178)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

3D structure

• AlphaFold DB: A0A1J0MXR1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	82.68	99.674	0.824
amiF	Streptococcus thermophilus LMD-9	82.353	99.674	0.821
amiF	Streptococcus salivarius strain HSISS4	81.699	99.674	0.814