Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   PQ615_RS01820 Genome accession   NZ_CP117058
Coordinates   387279..388349 (+) Length   356 a.a.
NCBI ID   WP_031239151.1    Uniprot ID   A0A3L8GMR4
Organism   Streptococcus iniae strain LSSM211007SI     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 382279..393349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ615_RS01805 (PQ615_01805) amiA3 382804..384783 (+) 1980 WP_304482264.1 peptide ABC transporter substrate-binding protein Regulator
  PQ615_RS01810 (PQ615_01810) amiC 384848..386347 (+) 1500 WP_003100862.1 ABC transporter permease Regulator
  PQ615_RS01815 (PQ615_01815) amiD 386347..387273 (+) 927 WP_003100863.1 oligopeptide ABC transporter permease OppC Regulator
  PQ615_RS01820 (PQ615_01820) amiE 387279..388349 (+) 1071 WP_031239151.1 ABC transporter ATP-binding protein Regulator
  PQ615_RS01825 (PQ615_01825) amiF 388342..389265 (+) 924 WP_003100865.1 ATP-binding cassette domain-containing protein Regulator
  PQ615_RS01830 (PQ615_01830) - 389730..390897 (-) 1168 Protein_357 IS30-like element ISSag9 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40031.06 Da        Isoelectric Point: 5.9482

>NTDB_id=782424 PQ615_RS01820 WP_031239151.1 387279..388349(+) (amiE) [Streptococcus iniae strain LSSM211007SI]
MMENKEIILSAKNVVVEFDVRDRILTAIRDISVDLYEGEVLAVVGESGSGKSVLTKTFTGMLESNGRVAKGSINYRGKEL
TELKNHKDWEGIRGAKIATIFQDPMTSLDPIQTIGRQITEVIVKHQKKTKSEAKKLAIDYMNKVGIPEAEKRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKTLQKEYQFTIIFITHDLGVVASIATNVAVMYAGEIVE
YGTVEDIFYDPRHPYTWSLLSSLPQLADEKGVLFSIPGTPPSLYKPIVGDAFAPRSQYAMTIDFEENVPRFEINGTHWAK
TWLLHPDAPKVQKPEVIRNLHDKISSKQIYREEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=782424 PQ615_RS01820 WP_031239151.1 387279..388349(+) (amiE) [Streptococcus iniae strain LSSM211007SI]
ATCATGGAAAACAAAGAAATTATTTTAAGTGCTAAAAATGTTGTCGTTGAATTTGACGTTCGTGACCGTATTTTGACAGC
GATTCGTGATATTTCCGTTGATTTATATGAAGGTGAAGTCCTTGCGGTTGTTGGAGAATCTGGTAGTGGAAAATCAGTGT
TGACCAAAACATTTACGGGGATGTTAGAATCTAACGGTCGTGTTGCCAAGGGTTCAATTAATTACCGCGGTAAAGAATTA
ACTGAATTAAAAAATCACAAAGATTGGGAAGGAATCCGTGGTGCTAAAATTGCAACCATATTCCAAGATCCAATGACAAG
TTTGGATCCAATCCAAACTATCGGAAGACAAATTACAGAAGTTATTGTCAAACATCAAAAGAAAACAAAATCAGAAGCTA
AAAAATTGGCCATTGATTACATGAATAAAGTTGGGATTCCAGAAGCAGAAAAACGTTTTGATGAATACCCATTTCAGTAT
TCGGGTGGTATGCGCCAACGTATTGTTATTGCAATTGCTCTAGCTTGTCGCCCAGACATCCTTATTTGTGATGAGCCAAC
AACTGCTCTAGATGTAACTATTCAGGCGCAAATTATTGATCTGCTAAAAACGCTCCAAAAAGAATATCAATTCACCATTA
TTTTTATTACCCATGATTTAGGCGTAGTAGCAAGTATTGCAACCAATGTTGCAGTTATGTATGCTGGTGAAATTGTTGAG
TATGGAACTGTTGAAGATATCTTTTATGATCCAAGACATCCATATACTTGGAGTTTGCTTTCAAGTTTGCCACAATTAGC
CGATGAAAAAGGTGTCTTATTCTCCATTCCAGGAACACCACCATCATTGTATAAACCGATTGTTGGCGATGCATTTGCTC
CAAGATCTCAGTATGCAATGACAATTGATTTTGAAGAGAATGTTCCAAGGTTTGAAATTAATGGGACACATTGGGCAAAG
ACATGGTTGCTTCATCCAGATGCACCAAAAGTGCAAAAGCCAGAAGTCATTCGAAATCTTCATGACAAAATTTCAAGTAA
ACAAATCTATCGGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-300)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L8GMR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

78.333

100

0.792
  amiE Streptococcus thermophilus LMG 18311

77.778

100

0.787
  amiE Streptococcus thermophilus LMD-9

77.778

100

0.787
  oppD Streptococcus mutans UA159

56.232

96.91

0.545