Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JLF42_RS23075 Genome accession   NZ_AP022465
Coordinates   4813217..4814737 (+) Length   506 a.a.
NCBI ID   WP_055321500.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain STW0522-66     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4808217..4819737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLF42_RS23050 (STW0522ENT66_44790) ilvE 4809785..4810714 (-) 930 WP_021242827.1 branched-chain-amino-acid transaminase -
  JLF42_RS23055 (STW0522ENT66_44800) ilvM 4810733..4810996 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  JLF42_RS23060 (STW0522ENT66_44810) ilvG 4810993..4812639 (-) 1647 WP_055321501.1 acetolactate synthase 2 catalytic subunit -
  JLF42_RS23065 ilvX 4812642..4812692 (-) 51 WP_192930497.1 peptide IlvX -
  JLF42_RS23070 ilvL 4812779..4812877 (-) 99 WP_001311244.1 ilv operon leader peptide -
  JLF42_RS23075 (STW0522ENT66_44820) comM 4813217..4814737 (+) 1521 WP_055321500.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JLF42_RS23080 (STW0522ENT66_44830) - 4814768..4815106 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  JLF42_RS23085 (STW0522ENT66_44840) hdfR 4815225..4816046 (+) 822 WP_021242824.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54870.79 Da        Isoelectric Point: 7.1226

>NTDB_id=78223 JLF42_RS23075 WP_055321500.1 4813217..4814737(+) (comM) [Enterobacter roggenkampii strain STW0522-66]
MSLSVVYTRAALGVKAPLVSVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEAVADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLQPPGLLRQTGITG
ESSAKVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNSEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=78223 JLF42_RS23075 WP_055321500.1 4813217..4814737(+) (comM) [Enterobacter roggenkampii strain STW0522-66]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTGTTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCCAAAGAGGGCGGGCGA
TACGATTTACCTATCGCAATTGCGCTTCTCGCGGCTTCTGAGCAGCTTACTACGACCAGGCTAGGCTCGTACGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCATTGAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCAATTCGTGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATTGCCGAAAAGGGGTGTCTTATCGCCGGGCATCTT
CAGGAAGTGTGTGCCTGGCTGGAAGGCCGACATGAACTGTCCGAGCCGGAGGAGTGCGACGAGGCTGTAGCAGATGCGCC
AGAAGATCTCAGTGAGATCATGGGACAGGAGCAAGGTAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTCC
TGCTGATTGGCCCGCCTGGTACAGGTAAAACGATGCTGGCGAGCAGGCTGAGCGGGTTGCTCCCGCCGCTCAATAACCAT
GAAGCGCTGGAAAGCGCTGCCATATATAGCCTCATCAGTTCGGCATCGTTGCAAAAACAGTGGCGCCGTCGCCCTTTTCG
TTCCCCACATCATAGCGCTTCACTGACGGCAATGGTCGGCGGTGGGTCTATCCCCGGACCGGGTGAGATTTCACTGGCAC
ACAATGGCATTCTGTTTCTTGATGAGTTGCCTGAGTTTGAGCGTCGCGTGCTGGATGCACTGAGAGAACCTATTGAATCT
GGTGAGATACATATCTCGCGCACGCGGGCCAAAATAAGCTATCCCGCGCAGTTTCAACTGGTCGCTGCGATGAATCCCAG
CCCGACGGGGCATTATCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTTTCCGGCC
CATTCCTCGACCGTTTCGATTTGTCTCTCGAAATCCCCCTTCAGCCGCCGGGCCTGCTCAGGCAGACGGGCATAACGGGT
GAGAGCTCAGCAAAAGTGCGCGAGCGGGTGATCGCTGCCCAGGCACGACAATACGCCCGTCAAAACAGGCTGAATGCTCG
GCTTGATAATGCCGGGATCCGGCAGTTTTGTTCGCTTAACAGTGAGGATGCAGGATGGCTGGAGGAGACGTTGACGCGCT
TTGGGCTGTCTATACGTGCGTGGCAACGTTTGCTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGATGTACTGACATT
GAGAGGAAACACTTGCAGGAGGCGCTGAGTTATCGCGCTATCGATCGTTTGCTGCTGCACCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-387)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.743

100

0.591
  comM Vibrio campbellii strain DS40M4

58.964

99.209

0.585
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Legionella pneumophila str. Paris

50.503

98.221

0.496
  comM Legionella pneumophila strain ERS1305867

50.503

98.221

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441

Multiple sequence alignment