Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   Q3V23_RS07650 Genome accession   NZ_CP130487
Coordinates   1789077..1790165 (-) Length   362 a.a.
NCBI ID   WP_302859672.1    Uniprot ID   -
Organism   Streptomyces sp. VNUA116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1784077..1795165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V23_RS07630 (Q3V23_07630) - 1784680..1785246 (-) 567 WP_106675740.1 adenine phosphoribosyltransferase -
  Q3V23_RS07635 (Q3V23_07635) secF 1785243..1786346 (-) 1104 WP_106675739.1 protein translocase subunit SecF -
  Q3V23_RS07640 (Q3V23_07640) secD 1786348..1788246 (-) 1899 WP_302859670.1 protein translocase subunit SecD -
  Q3V23_RS07645 (Q3V23_07645) yajC 1788394..1788915 (-) 522 WP_302859671.1 preprotein translocase subunit YajC -
  Q3V23_RS07650 (Q3V23_07650) ruvB 1789077..1790165 (-) 1089 WP_302859672.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  Q3V23_RS07655 (Q3V23_07655) ruvA 1790239..1790853 (-) 615 WP_302859673.1 Holliday junction branch migration protein RuvA -
  Q3V23_RS07660 (Q3V23_07660) ruvC 1790850..1791401 (-) 552 WP_106675734.1 crossover junction endodeoxyribonuclease RuvC -
  Q3V23_RS07665 (Q3V23_07665) - 1791524..1792276 (-) 753 WP_302859674.1 YebC/PmpR family DNA-binding transcriptional regulator -
  Q3V23_RS07670 (Q3V23_07670) pdxT 1792340..1792939 (-) 600 WP_106675733.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  Q3V23_RS07675 (Q3V23_07675) pdxS 1793023..1793871 (-) 849 WP_302868559.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  Q3V23_RS07680 (Q3V23_07680) - 1794040..1794582 (-) 543 WP_302859675.1 hypothetical protein -
  Q3V23_RS07685 (Q3V23_07685) - 1794623..1794817 (+) 195 WP_302859676.1 hypothetical protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38505.94 Da        Isoelectric Point: 4.9001

>NTDB_id=782229 Q3V23_RS07650 WP_302859672.1 1789077..1790165(-) (ruvB) [Streptomyces sp. VNUA116]
MNWDDESAYAEPPAGDRLVGTAADGEDRAVEAALRPKDLGEFVGQERVREQLDLVLKAARARGATADHVLLSGAPGLGKT
TLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIP
LELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELQRVVHRSARLLDVDIADEGAAEIAGRSRGTPRIANRLLRR
VRDYAQVKADGVITREIAAQALDVYEVDARGLDRLDRAVLTALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREG
LLARTPRGRIATPAAWEHLGLTREAGAAGPAGTPPQQGLFGG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=782229 Q3V23_RS07650 WP_302859672.1 1789077..1790165(-) (ruvB) [Streptomyces sp. VNUA116]
GTGAACTGGGACGACGAATCCGCATACGCGGAGCCCCCGGCAGGCGACCGCCTCGTCGGCACCGCCGCCGACGGCGAGGA
CCGGGCCGTCGAGGCCGCGCTGCGCCCCAAGGACCTCGGCGAGTTCGTCGGCCAGGAGCGCGTCCGCGAGCAGCTCGACC
TCGTCCTCAAGGCCGCCCGAGCCCGCGGTGCCACCGCCGACCACGTGCTGCTCTCCGGCGCCCCCGGGCTCGGCAAGACC
ACCCTCTCGATGATCATCGCGGCCGAGATGGGCGCCCCCATCCGCATCACCTCCGGCCCCGCCATCCAGCACGCCGGCGA
CCTCGCCGCGATCCTCTCCTCCCTCACCGAGGGAGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCGCGGCCCGCCG
AGGAGATGCTCTACATGGCCATGGAGGACTTCCGCGTCGACGTGATCGTCGGCAAGGGCCCCGGCGCCACCGCCATCCCC
CTGGAGCTGCCGCCCTTCACCCTCGTCGGCGCCACCACCCGGGCCGGCCTCCTGCCGCCCCCGCTGCGCGACCGCTTCGG
CTTCACCGGGCACATGGAGTTCTACGCCCCCGCCGAGCTGCAGCGCGTGGTGCACCGCTCCGCCCGCCTGCTGGACGTGG
ACATAGCGGATGAGGGCGCCGCCGAGATCGCCGGCCGCTCCCGCGGCACCCCCCGCATCGCGAACCGCCTGCTGCGCCGC
GTCCGCGACTACGCCCAGGTCAAGGCCGACGGAGTGATCACCCGCGAGATCGCCGCCCAGGCCCTGGACGTCTACGAGGT
CGACGCCCGCGGTCTCGACCGCCTCGACCGCGCCGTCCTGACGGCCCTCCTCAAGCTCTTCGGCGGCGGCCCGGTCGGCC
TGTCGACGCTGGCCGTGGCCGTCGGCGAGGAGCGCGAGACGGTCGAGGAGGTCGCCGAGCCGTTCCTCGTCCGCGAGGGC
CTGCTGGCTCGTACGCCCAGAGGCCGCATCGCCACCCCCGCCGCGTGGGAGCACCTCGGCCTCACGCGCGAGGCCGGTGC
GGCGGGCCCCGCGGGCACCCCGCCCCAGCAGGGCCTCTTCGGCGGGTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(195-268)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(34-192)

RuvB C-terminal winged helix domain (WHD_RuvB)

(270-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.988

90.055

0.486
  ruvB Streptococcus pneumoniae TIGR4

52.778

89.503

0.472
  ruvB Streptococcus pneumoniae R6

52.778

89.503

0.472
  ruvB Streptococcus pneumoniae D39

52.778

89.503

0.472
  ruvB Synechocystis sp. PCC 6803

53.846

86.188

0.464
  ruvB Helicobacter pylori 26695

49.387

90.055

0.445