Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LYZ37_RS13125 Genome accession   NZ_CP117029
Coordinates   2867300..2867836 (-) Length   178 a.a.
NCBI ID   WP_069667424.1    Uniprot ID   A0AAE5LJP0
Organism   Vibrio tubiashii strain FP17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2862300..2872836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS13105 (LYZ37_13105) - 2862700..2863005 (-) 306 WP_420794631.1 MSHA biogenesis protein MshK -
  LYZ37_RS13110 (LYZ37_13110) - 2863016..2863666 (-) 651 WP_272785775.1 MSHA biogenesis protein MshJ -
  LYZ37_RS13115 (LYZ37_13115) - 2863666..2865108 (-) 1443 WP_272785776.1 MSHA biogenesis protein MshI -
  LYZ37_RS13120 (LYZ37_13120) csrD 2865117..2867135 (-) 2019 WP_272785777.1 RNase E specificity factor CsrD -
  LYZ37_RS13125 (LYZ37_13125) ssb 2867300..2867836 (-) 537 WP_069667424.1 single-stranded DNA-binding protein Machinery gene
  LYZ37_RS13130 (LYZ37_13130) qstR 2868120..2868770 (+) 651 WP_272785778.1 LuxR C-terminal-related transcriptional regulator Regulator
  LYZ37_RS13135 (LYZ37_13135) galU 2868888..2869763 (+) 876 WP_272785779.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LYZ37_RS13140 (LYZ37_13140) uvrA 2869904..2872726 (+) 2823 WP_272785780.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19597.69 Da        Isoelectric Point: 5.2157

>NTDB_id=782120 LYZ37_RS13125 WP_069667424.1 2867300..2867836(-) (ssb) [Vibrio tubiashii strain FP17]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPGQGMGQQQQPQQGGWGQPQQPAMQHQPAQQPQSQPQQ
AQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=782120 LYZ37_RS13125 WP_069667424.1 2867300..2867836(-) (ssb) [Vibrio tubiashii strain FP17]
ATGGCTAGCCGTGGAGTTAACAAAGTTATTTTAGTCGGTAATCTGGGTTCTGACCCAGAAGTACGTTACATGCCAAGTGG
CGGTGCTGTAGCCAATATTACTATCGCAACGTCTGAATCGTGGCGTGATAAAGCTACTGGTGAACAGCGTGAAAAAACGG
AATGGCACCGTGTGGCACTATTCGGCAAGTTAGCTGAAGTTGCTGGTGAATATCTACGTAAGGGCTCTCAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAGTGGCAAGATCAAAGTGGTCAAGACCGCTACACAACAGAAGTTGTCGTTCAAGGCTT
TAACGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGTGCTCCAGGTCAAGGTATGGGCCAACAGCAGCAACCTC
AGCAAGGTGGATGGGGACAACCTCAGCAGCCTGCAATGCAGCATCAACCTGCTCAACAGCCGCAGTCACAACCACAACAA
GCTCAGCCTCAGTACAATGAGCCGCCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

85

100

0.86
  ssb Glaesserella parasuis strain SC1401

56.316

100

0.601
  ssb Neisseria meningitidis MC58

47.826

100

0.494
  ssb Neisseria gonorrhoeae MS11

47.826

100

0.494