Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   LYZ37_RS13130 Genome accession   NZ_CP117029
Coordinates   2868120..2868770 (+) Length   216 a.a.
NCBI ID   WP_272785778.1    Uniprot ID   -
Organism   Vibrio tubiashii strain FP17     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2863120..2873770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS13115 (LYZ37_13115) - 2863666..2865108 (-) 1443 WP_272785776.1 MSHA biogenesis protein MshI -
  LYZ37_RS13120 (LYZ37_13120) csrD 2865117..2867135 (-) 2019 WP_272785777.1 RNase E specificity factor CsrD -
  LYZ37_RS13125 (LYZ37_13125) ssb 2867300..2867836 (-) 537 WP_069667424.1 single-stranded DNA-binding protein Machinery gene
  LYZ37_RS13130 (LYZ37_13130) qstR 2868120..2868770 (+) 651 WP_272785778.1 LuxR C-terminal-related transcriptional regulator Regulator
  LYZ37_RS13135 (LYZ37_13135) galU 2868888..2869763 (+) 876 WP_272785779.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LYZ37_RS13140 (LYZ37_13140) uvrA 2869904..2872726 (+) 2823 WP_272785780.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25029.09 Da        Isoelectric Point: 9.1853

>NTDB_id=782121 LYZ37_RS13130 WP_272785778.1 2868120..2868770(+) (qstR) [Vibrio tubiashii strain FP17]
MAKNIYARTIYFLTENKSVNPIIERLERRMEIAIPTMAPNDLLLALQQYKHRILIIDYQEYTQLKNVISELPLADKSFET
IIFNVSHRLTTDELLAFGHLKAVFYQDIDIEQLVKGYEGVINGETWLPRKVTAQLLFHYRNVVDTHTTPATVDLTTREMQ
ILRCLMSGASNTQIADDMFISEFTVKSHLQKVFKKLSVKNRVQAAAWAKQHMRPMS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=782121 LYZ37_RS13130 WP_272785778.1 2868120..2868770(+) (qstR) [Vibrio tubiashii strain FP17]
ATGGCTAAAAACATCTATGCGCGAACTATTTACTTTCTCACAGAAAACAAGTCTGTAAATCCAATCATTGAACGCTTAGA
GAGACGAATGGAGATCGCCATTCCGACAATGGCACCCAACGATTTGTTACTCGCCCTACAGCAGTATAAACATCGAATCT
TAATCATTGATTATCAAGAATATACCCAACTGAAAAACGTGATTAGTGAACTCCCTTTGGCAGACAAGTCATTTGAAACC
ATCATTTTTAATGTCTCTCATCGCTTGACCACAGACGAACTATTGGCATTTGGTCATTTGAAAGCGGTCTTCTACCAAGA
TATAGACATAGAGCAGCTCGTCAAAGGGTATGAAGGGGTTATCAATGGTGAAACCTGGTTGCCAAGAAAAGTCACGGCAC
AATTACTGTTCCACTATCGTAATGTTGTTGACACCCATACCACGCCCGCAACCGTCGACTTAACTACTAGAGAAATGCAG
ATACTGCGTTGTTTAATGTCCGGGGCTTCCAATACCCAAATCGCCGACGATATGTTTATCAGTGAGTTCACCGTTAAATC
TCATTTGCAGAAGGTTTTTAAGAAATTAAGCGTCAAAAATCGTGTTCAGGCTGCCGCTTGGGCCAAACAACATATGCGGC
CAATGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

52.83

98.148

0.519
  qstR Vibrio parahaemolyticus RIMD 2210633

51.887

98.148

0.509
  qstR Vibrio cholerae strain A1552

48.826

98.611

0.481