Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LYZ37_RS00105 Genome accession   NZ_CP117029
Coordinates   23245..24768 (+) Length   507 a.a.
NCBI ID   WP_272786023.1    Uniprot ID   -
Organism   Vibrio tubiashii strain FP17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 18245..29768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS00090 (LYZ37_00090) ilvE 19878..20825 (-) 948 WP_004743612.1 branched-chain-amino-acid transaminase -
  LYZ37_RS00095 (LYZ37_00095) ilvM 20837..21121 (-) 285 WP_004743613.1 acetolactate synthase 2 small subunit -
  LYZ37_RS00100 (LYZ37_00100) ilvG 21123..22769 (-) 1647 WP_171325401.1 acetolactate synthase 2 catalytic subunit -
  LYZ37_RS00105 (LYZ37_00105) comM 23245..24768 (+) 1524 WP_272786023.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LYZ37_RS00110 (LYZ37_00110) - 24797..25777 (-) 981 WP_272786024.1 DUF2860 domain-containing protein -
  LYZ37_RS00115 (LYZ37_00115) - 25959..26843 (+) 885 WP_272786025.1 acyltransferase -
  LYZ37_RS00120 (LYZ37_00120) - 26895..27497 (-) 603 WP_004743618.1 thiol:disulfide interchange protein DsbA/DsbL -
  LYZ37_RS00125 (LYZ37_00125) - 27523..28509 (-) 987 WP_272787178.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55126.17 Da        Isoelectric Point: 8.2020

>NTDB_id=782090 LYZ37_RS00105 WP_272786023.1 23245..24768(+) (comM) [Vibrio tubiashii strain FP17]
MGLAIIHSRACVGVEAPTVTVEVHISNGMPGFCLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIPVNELNNQEFIGELALSGELRRVKGVLPAALAANRVERSLVVPHSNGDQAALVGAERHKSAQSL
LEVCADLCGQQKLSLHQTAQVCAAPSSQRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPDMSD
SEALESASVASLTQQEINAHNWKQRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQSRANPQTILRYLSRLSGPLLDRFDMSLEIPALPKGTLAEGGER
GESTQIVRDRVLIAREKMLSRASKVNALLGSREIERYCPLHKQDAQFLETALHRLGLSIRAYHRIIKVARTIADLEGASH
IERNHLAEALGYRAMDRLLRQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=782090 LYZ37_RS00105 WP_272786023.1 23245..24768(+) (comM) [Vibrio tubiashii strain FP17]
ATGGGATTAGCGATCATTCACAGCCGAGCTTGCGTCGGGGTAGAGGCACCAACAGTGACGGTAGAAGTACATATTAGTAA
TGGTATGCCGGGATTTTGTTTGGTTGGGCTACCTGAAACTACGGTTAAAGAGTCTCGCGACAGAGTGCGCAGTGCGATCA
TCAATTCGCGTTTTGAATTTCCAGCTAAGCGAATCACAGTCAATCTCGCGCCTGCTGATTTACCTAAAGAAGGTGGTCGA
TTCGATCTGCCGATTGCATTAGGTATTTTAGCGGCGTCGGAGCAGATTCCTGTTAATGAACTAAATAATCAAGAGTTTAT
TGGCGAGCTTGCTTTATCTGGAGAGCTAAGAAGGGTGAAAGGTGTGTTACCCGCGGCATTGGCTGCCAATCGAGTTGAGC
GCAGTTTAGTGGTCCCCCATAGCAATGGTGATCAGGCGGCTTTAGTTGGTGCTGAAAGACATAAATCGGCGCAAAGCTTA
CTTGAAGTGTGTGCCGACCTTTGTGGACAACAAAAGCTCTCACTACATCAAACCGCGCAAGTTTGTGCAGCACCGAGTAG
CCAGAGAGATCTGCAAGATATAATCGGGCAGCAGCAAGGCAAGCGCGCTTTAGAGATTGCTGCCGCAGGCAATCACAACT
TGTTGTTTCTTGGCCCGCCGGGGACAGGAAAAACTATGTTGGCTTCGCGTTTATGCGACTTGCTGCCCGATATGTCAGAT
AGTGAGGCACTTGAATCGGCTTCAGTAGCTTCATTAACCCAACAAGAAATCAATGCCCACAATTGGAAGCAGCGTCCTTT
TCGCGCTCCGCATCACTCAAGCTCGATGGCGGCACTGGTGGGAGGAGGCTCTATCCCTAGGCCGGGAGAGATCTCTTTGG
CGCACAATGGGCTGTTGTTTCTTGATGAGATGCCAGAATTCGAGCGCAAAGTACTCGATTCATTACGGGAACCATTAGAG
TCAGGGGAGATTATTATCTCACGAGCCCAAGGCAAGACCCGCTTTCCTGCGAGATTTCAGCTCGTTGGGGCATTAAACCC
AAGCCCCACTGGATACTACGAAGGCAACCAATCACGAGCCAATCCGCAAACTATTCTACGTTACTTAAGCCGCTTATCTG
GCCCATTACTTGATCGCTTTGATATGTCTCTGGAAATCCCTGCTTTGCCAAAGGGGACGTTAGCGGAAGGGGGCGAAAGA
GGTGAATCGACCCAGATTGTGCGAGATAGAGTATTGATAGCGCGTGAGAAGATGTTGTCGCGAGCGAGTAAGGTGAACGC
CTTGTTAGGCAGTCGAGAAATTGAGCGCTACTGCCCTTTGCATAAACAAGATGCCCAGTTCTTGGAAACCGCATTGCATC
GACTGGGGCTGTCGATTCGCGCTTACCATCGGATTATCAAGGTCGCACGTACCATTGCTGACTTAGAGGGGGCAAGCCAT
ATTGAGCGCAATCATCTTGCCGAAGCACTAGGCTACCGAGCGATGGATCGCTTGTTGCGGCAGTTGACCGCGCAGGCGGT
GTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

86.588

100

0.866
  comM Vibrio campbellii strain DS40M4

84.615

100

0.846
  comM Haemophilus influenzae Rd KW20

65.089

100

0.651
  comM Glaesserella parasuis strain SC1401

62.745

100

0.631
  comM Legionella pneumophila str. Paris

49.597

97.83

0.485
  comM Legionella pneumophila strain ERS1305867

49.597

97.83

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.008

100

0.442