Detailed information NTG0782072

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: PPK11_RS05175
• Genome accession: NZ_CP117024
• Coordinates: 1097585..1098571 (-)
• Length: 328 a.a.
• NCBI ID: WP_273896144.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 444A6
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1092585..1103571

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PPK11_RS05150	-	1092650..1092850 (+)	201	WP_273896136.1	hypothetical protein	-
PPK11_RS05155	-	1092875..1093807 (-)	933	WP_273896137.1	GDP-L-fucose synthase family protein	-
PPK11_RS05160	gmd	1093800..1094945 (-)	1146	WP_273896140.1	GDP-mannose 4,6-dehydratase	-
PPK11_RS05165	-	1094974..1096386 (-)	1413	WP_273896142.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
PPK11_RS05170	comB10	1096456..1097592 (-)	1137	WP_273896143.1	DNA type IV secretion system protein ComB10	Machinery gene
PPK11_RS05175	comB9	1097585..1098571 (-)	987	WP_273896144.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
PPK11_RS05180	comB8	1098571..1099314 (-)	744	WP_273896145.1	type IV secretion system protein	Machinery gene
PPK11_RS05185	comB7	1099311..1099424 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
PPK11_RS05190	comB6	1099440..1100495 (-)	1056	WP_273899228.1	P-type conjugative transfer protein TrbL	Machinery gene
PPK11_RS05195	-	1100503..1101498 (-)	996	WP_273896180.1	PDZ domain-containing protein	-
PPK11_RS05200	-	1101498..1101800 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
PPK11_RS05205	panD	1101803..1102156 (-)	354	WP_273896204.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37925.61 Da
• Isoelectric Point: 9.0237

>NTDB_id=782072 PPK11_RS05175 WP_273896144.1 1097585..1098571(-) (comB9) [Helicobacter pylori strain 444A6]
MRKVLYALMGFLLAFSVLKADDFLEEANETTPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALENAPTNDNKPLKEEPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCL
GICSKKSKLSLMPEEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSTKWTLRLGKDYLCIR
FIKKGKDE

Nucleotide

• Length: 987 bp

>NTDB_id=782072 PPK11_RS05175 WP_273896144.1 1097585..1098571(-) (comB9) [Helicobacter pylori strain 444A6]
ATGCGTAAGGTTTTATACGCTCTCATGGGCTTTTTGTTGGCTTTTAGCGTTTTAAAAGCTGATGATTTTTTGGAAGAAGC
GAACGAAACAACCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAGCCTTTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTGCAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCCCAAAATAAAGAAAATGCCCTTGAAAATGCCCCCACAAACGACAACAAGCCCTT
AAAAGAAGAACCCTTAAAAGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACTA
ATGCGATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTA
GGGATTTGTTCTAAAAAATCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAACAATTCACTTATTTCAAATT
TGACAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGA
TTGTGGGCGATTACATTATCGCTGAAGACGTTTCTACTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGT
TTTATCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-319)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.207	100	0.942