Detailed information NTG0782075

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: PPK11_RS05190
• Genome accession: NZ_CP117024
• Coordinates: 1099440..1100495 (-)
• Length: 351 a.a.
• NCBI ID: WP_273899228.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 444A6
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1094440..1105495

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PPK11_RS05165	-	1094974..1096386 (-)	1413	WP_273896142.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
PPK11_RS05170	comB10	1096456..1097592 (-)	1137	WP_273896143.1	DNA type IV secretion system protein ComB10	Machinery gene
PPK11_RS05175	comB9	1097585..1098571 (-)	987	WP_273896144.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
PPK11_RS05180	comB8	1098571..1099314 (-)	744	WP_273896145.1	type IV secretion system protein	Machinery gene
PPK11_RS05185	comB7	1099311..1099424 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
PPK11_RS05190	comB6	1099440..1100495 (-)	1056	WP_273899228.1	P-type conjugative transfer protein TrbL	Machinery gene
PPK11_RS05195	-	1100503..1101498 (-)	996	WP_273896180.1	PDZ domain-containing protein	-
PPK11_RS05200	-	1101498..1101800 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
PPK11_RS05205	panD	1101803..1102156 (-)	354	WP_273896204.1	aspartate 1-decarboxylase	-
PPK11_RS05210	-	1102146..1104371 (-)	2226	WP_273896205.1	AAA family ATPase	-
PPK11_RS05215	-	1104371..1104646 (-)	276	WP_108400060.1	ATP-dependent Clp protease adaptor ClpS	-
PPK11_RS05220	-	1104678..1105091 (-)	414	WP_001023008.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39698.63 Da
• Isoelectric Point: 9.0406

>NTDB_id=782075 PPK11_RS05190 WP_273899228.1 1099440..1100495(-) (comB6) [Helicobacter pylori strain 444A6]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASTLTEALLFVGFFALFNY
ALKNPSRFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVIMCLKKCFALGFYKPFLLLVGFLNVSVTKALIDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALTSLQYITTSPAPSSVSTSISGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=782075 PPK11_RS05190 WP_273899228.1 1099440..1100495(-) (comB6) [Helicobacter pylori strain 444A6]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGTGCCAGCACGCTAACAGAGGCGTTATTGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTTTTCCAAAACGCTATCTTTATTGCACCTAACATGATCACGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTCAATCATGGTTTCTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGTATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATTATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTAATTATGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAATCTCAGCCAAAACGCCCTTACTTCCTTACAATACATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTATAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.442	100	0.954