Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   PPK11_RS05180 Genome accession   NZ_CP117024
Coordinates   1098571..1099314 (-) Length   247 a.a.
NCBI ID   WP_273896145.1    Uniprot ID   -
Organism   Helicobacter pylori strain 444A6     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1093571..1104314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPK11_RS05160 gmd 1093800..1094945 (-) 1146 WP_273896140.1 GDP-mannose 4,6-dehydratase -
  PPK11_RS05165 - 1094974..1096386 (-) 1413 WP_273896142.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  PPK11_RS05170 comB10 1096456..1097592 (-) 1137 WP_273896143.1 DNA type IV secretion system protein ComB10 Machinery gene
  PPK11_RS05175 comB9 1097585..1098571 (-) 987 WP_273896144.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  PPK11_RS05180 comB8 1098571..1099314 (-) 744 WP_273896145.1 type IV secretion system protein Machinery gene
  PPK11_RS05185 comB7 1099311..1099424 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  PPK11_RS05190 comB6 1099440..1100495 (-) 1056 WP_273899228.1 P-type conjugative transfer protein TrbL Machinery gene
  PPK11_RS05195 - 1100503..1101498 (-) 996 WP_273896180.1 PDZ domain-containing protein -
  PPK11_RS05200 - 1101498..1101800 (-) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  PPK11_RS05205 panD 1101803..1102156 (-) 354 WP_273896204.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28737.96 Da        Isoelectric Point: 8.9546

>NTDB_id=782073 PPK11_RS05180 WP_273896145.1 1098571..1099314(-) (comB8) [Helicobacter pylori strain 444A6]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIAIVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLTNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APINRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=782073 PPK11_RS05180 WP_273896145.1 1098571..1099314(-) (comB8) [Helicobacter pylori strain 444A6]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTTCGGTTGGAAAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATTGCCATTGTTTTAGCGATCGTGTTAATCAGTGTTCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATCTAT
GCACAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCCATTGCAGCTAAACTAACGAACGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATCTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
GCGCCGATCAATAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.356

100

0.964