Detailed information NTG0782071

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: PPK11_RS05170
• Genome accession: NZ_CP117024
• Coordinates: 1096456..1097592 (-)
• Length: 378 a.a.
• NCBI ID: WP_273896143.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 444A6
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1091456..1102592

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PPK11_RS05145	hypE	1091575..1092573 (+)	999	WP_273896134.1	hydrogenase expression/formation protein HypE	-
PPK11_RS05150	-	1092650..1092850 (+)	201	WP_273896136.1	hypothetical protein	-
PPK11_RS05155	-	1092875..1093807 (-)	933	WP_273896137.1	GDP-L-fucose synthase family protein	-
PPK11_RS05160	gmd	1093800..1094945 (-)	1146	WP_273896140.1	GDP-mannose 4,6-dehydratase	-
PPK11_RS05165	-	1094974..1096386 (-)	1413	WP_273896142.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
PPK11_RS05170	comB10	1096456..1097592 (-)	1137	WP_273896143.1	DNA type IV secretion system protein ComB10	Machinery gene
PPK11_RS05175	comB9	1097585..1098571 (-)	987	WP_273896144.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
PPK11_RS05180	comB8	1098571..1099314 (-)	744	WP_273896145.1	type IV secretion system protein	Machinery gene
PPK11_RS05185	comB7	1099311..1099424 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
PPK11_RS05190	comB6	1099440..1100495 (-)	1056	WP_273899228.1	P-type conjugative transfer protein TrbL	Machinery gene
PPK11_RS05195	-	1100503..1101498 (-)	996	WP_273896180.1	PDZ domain-containing protein	-
PPK11_RS05200	-	1101498..1101800 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
PPK11_RS05205	panD	1101803..1102156 (-)	354	WP_273896204.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42181.74 Da
• Isoelectric Point: 9.9021

>NTDB_id=782071 PPK11_RS05170 WP_273896143.1 1096456..1097592(-) (comB10) [Helicobacter pylori strain 444A6]
MNKWLKGAIVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDSTIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPIDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=782071 PPK11_RS05170 WP_273896143.1 1096456..1097592(-) (comB10) [Helicobacter pylori strain 444A6]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCTAAAGACTCCACCATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTAAAAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGTATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTGATTGCACAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCCTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAACCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGTAGGGTATTTATTTCGCCCAATACCGACATCTTTTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	97.884	100	0.979