Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JLF39_RS01475 Genome accession   NZ_AP022452
Coordinates   312392..312916 (+) Length   174 a.a.
NCBI ID   WP_008503384.1    Uniprot ID   A0A156LWB5
Organism   Enterobacter kobei strain STW0522-62     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 307392..317916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLF39_RS01455 (STW0522ENT62_02880) aphA 307716..308429 (+) 714 WP_014882148.1 acid phosphatase AphA -
  JLF39_RS01460 (STW0522ENT62_02890) - 308543..308959 (+) 417 WP_200924715.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JLF39_RS01465 (STW0522ENT62_02900) - 308962..309315 (+) 354 WP_014882150.1 MmcQ/YjbR family DNA-binding protein -
  JLF39_RS01470 (STW0522ENT62_02910) uvrA 309318..312140 (-) 2823 WP_014882151.1 excinuclease ABC subunit UvrA -
  JLF39_RS01475 (STW0522ENT62_02920) ssb 312392..312916 (+) 525 WP_008503384.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JLF39_RS01480 (STW0522ENT62_02930) - 312976..313257 (-) 282 WP_014882153.1 YjcB family protein -
  JLF39_RS01485 (STW0522ENT62_02940) - 313785..315350 (+) 1566 WP_200924716.1 EAL domain-containing protein -
  JLF39_RS01490 (STW0522ENT62_02950) soxS 315357..315683 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  JLF39_RS01495 (STW0522ENT62_02960) soxR 315782..316240 (+) 459 WP_014882155.1 redox-sensitive transcriptional activator SoxR -
  JLF39_RS01500 (STW0522ENT62_02970) - 316622..317293 (+) 672 WP_023331807.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18593.60 Da        Isoelectric Point: 5.2456

>NTDB_id=78184 JLF39_RS01475 WP_008503384.1 312392..312916(+) (ssb) [Enterobacter kobei strain STW0522-62]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=78184 JLF39_RS01475 WP_008503384.1 312392..312916(+) (ssb) [Enterobacter kobei strain STW0522-62]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTGGTGCTGTTTGGCAAACTGGCAGAAGTTGCCGGTGAGTATCTACGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGTAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACCGAAGTTGTGGTAAACGTTGG
CGGTACCATGCAGATGCTGGGCGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGTCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAGCCACCAATGGACTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A156LWB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368

Multiple sequence alignment