Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   M0P24_RS02625 Genome accession   NZ_CP116957
Coordinates   498043..498753 (+) Length   236 a.a.
NCBI ID   WP_248497804.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP070     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 493043..503753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS02595 (M0P24_02595) - 493521..493823 (+) 303 WP_003065782.1 PepSY domain-containing protein -
  M0P24_RS02600 (M0P24_02600) - 494071..494679 (+) 609 WP_003065779.1 TVP38/TMEM64 family protein -
  M0P24_RS02605 (M0P24_02605) - 494771..495418 (-) 648 WP_003065777.1 amino acid ABC transporter permease -
  M0P24_RS02610 (M0P24_02610) - 495430..496134 (-) 705 WP_003065775.1 amino acid ABC transporter permease -
  M0P24_RS02615 (M0P24_02615) - 496151..496963 (-) 813 WP_013852112.1 transporter substrate-binding domain-containing protein -
  M0P24_RS02620 (M0P24_02620) - 496974..497738 (-) 765 WP_003065772.1 amino acid ABC transporter ATP-binding protein -
  M0P24_RS02625 (M0P24_02625) vicR 498043..498753 (+) 711 WP_248497804.1 response regulator YycF Regulator
  M0P24_RS02630 (M0P24_02630) vicK 498746..500098 (+) 1353 WP_003065768.1 cell wall metabolism sensor histidine kinase VicK Regulator
  M0P24_RS02635 (M0P24_02635) vicX 500099..500908 (+) 810 WP_003065766.1 MBL fold metallo-hydrolase Regulator
  M0P24_RS02640 (M0P24_02640) rnc 501162..501848 (+) 687 WP_003065764.1 ribonuclease III -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27118.99 Da        Isoelectric Point: 4.8347

>NTDB_id=781611 M0P24_RS02625 WP_248497804.1 498043..498753(+) (vicR) [Streptococcus pasteurianus strain WUSP070]
MKKILIVDDEKPISDIIKFNLAKEGYETVTAFDGREAITKFEEENPDLIILDLMLPELDGLEVAKEVRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTENIETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIK
LTHREFELLHHLATHMGQVMTREYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKSYE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=781611 M0P24_RS02625 WP_248497804.1 498043..498753(+) (vicR) [Streptococcus pasteurianus strain WUSP070]
ATGAAAAAAATTCTTATCGTGGATGATGAAAAACCAATTTCGGATATTATTAAATTTAATTTAGCTAAAGAAGGTTATGA
AACTGTAACGGCTTTTGATGGTCGTGAAGCTATTACAAAGTTTGAGGAAGAAAATCCAGATTTAATTATCCTGGATTTGA
TGTTGCCAGAGTTGGATGGGCTTGAAGTGGCTAAGGAAGTTCGCAAGACAAGTCATATTCCAATCATCATGTTGTCTGCT
AAGGATAGCGAGTTTGATAAAGTTATCGGTCTTGAAATTGGTGCAGATGACTATGTAACCAAACCATTTTCAAATCGTGA
ATTGTTGGCGCGTGTTAAAGCGCACCTTCGTCGTACAGAAAATATTGAAACAGCAGTTGCTGAAGAAAATGCTTCGGCTT
CAAATTCAGAAATCACAATTGGCGACTTAAAAATTTTACCAGATGCCTTTGTAGCACAAAAACGTGGTGAAGATATCAAA
TTAACACACCGTGAGTTTGAATTGCTTCATCATTTGGCAACTCATATGGGACAAGTCATGACTCGTGAATATCTTTTGGA
AACCGTTTGGGGCTATGATTATTTTGGTGATGTGCGTACGGTTGATGTAACGATTCGTCGTTTACGCGAAAAAATTGAAG
ATACACCAAGCCGTCCAGAATATATTTTGACACGTCGGGGTGTTGGGTACTACATGAAGTCATATGAATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.254

100

0.903
  micA Streptococcus pneumoniae Cp1015

77.35

99.153

0.767
  covR Streptococcus salivarius strain HSISS4

47.414

98.305

0.466
  covR Lactococcus lactis subsp. lactis strain DGCC12653

45.69

98.305

0.449
  scnR Streptococcus mutans UA159

37.288

100

0.373