Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | QZH48_RS11975 | Genome accession | NZ_CP129879 |
| Coordinates | 2438277..2439278 (-) | Length | 333 a.a. |
| NCBI ID | WP_003131994.1 | Uniprot ID | Q9CDL3 |
| Organism | Lactococcus lactis subsp. lactis strain CAB701 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2433277..2444278
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QZH48_RS11930 (QZH48_11930) | - | 2433346..2433711 (-) | 366 | WP_003131985.1 | MerR family transcriptional regulator | - |
| QZH48_RS11935 (QZH48_11935) | - | 2433812..2434249 (-) | 438 | WP_038602480.1 | low molecular weight protein-tyrosine-phosphatase | - |
| QZH48_RS11940 (QZH48_11940) | - | 2434849..2435016 (-) | 168 | WP_230315131.1 | hypothetical protein | - |
| QZH48_RS11945 (QZH48_11945) | - | 2435298..2435600 (+) | 303 | Protein_2316 | integrase core domain-containing protein | - |
| QZH48_RS11950 (QZH48_11950) | - | 2435844..2436128 (-) | 285 | WP_038602483.1 | bacteriocin immunity protein | - |
| QZH48_RS11955 (QZH48_11955) | - | 2436166..2436339 (-) | 174 | WP_229049640.1 | class IIb bacteriocin, lactobin A/cerein 7B family | - |
| QZH48_RS11960 (QZH48_11960) | - | 2436451..2436771 (-) | 321 | WP_256294209.1 | hypothetical protein | - |
| QZH48_RS11965 (QZH48_11965) | - | 2436909..2437070 (-) | 162 | WP_301675738.1 | bacteriocin | - |
| QZH48_RS11970 (QZH48_11970) | - | 2437256..2438140 (-) | 885 | WP_038602487.1 | XRE/MutR family transcriptional regulator | - |
| QZH48_RS11975 (QZH48_11975) | ruvB | 2438277..2439278 (-) | 1002 | WP_003131994.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| QZH48_RS11980 (QZH48_11980) | ruvA | 2439405..2439998 (-) | 594 | WP_003131995.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| QZH48_RS11985 (QZH48_11985) | hexB | 2440110..2442080 (-) | 1971 | WP_146978291.1 | DNA mismatch repair endonuclease MutL | Machinery gene |
| QZH48_RS11990 (QZH48_11990) | - | 2442209..2442904 (-) | 696 | WP_038602492.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 333 a.a. Molecular weight: 37633.17 Da Isoelectric Point: 4.5825
>NTDB_id=781243 QZH48_RS11975 WP_003131994.1 2438277..2439278(-) (ruvB) [Lactococcus lactis subsp. lactis strain CAB701]
MNDILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGLGKTTMAFVIANELGVNI
KQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVLYSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGISSHMEYYQERDLEEIVKRTADIFEVEVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVD
KAITDKALSILDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLIQKGFLMRTKQGRKVTQR
AYEHLGYVYNEED
MNDILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGLGKTTMAFVIANELGVNI
KQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVLYSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGISSHMEYYQERDLEEIVKRTADIFEVEVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVD
KAITDKALSILDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLIQKGFLMRTKQGRKVTQR
AYEHLGYVYNEED
Nucleotide
Download Length: 1002 bp
>NTDB_id=781243 QZH48_RS11975 WP_003131994.1 2438277..2439278(-) (ruvB) [Lactococcus lactis subsp. lactis strain CAB701]
ATGAACGATATATTAAACAAAGAGCCAATGGAAGAAGATTACGGTATTGAAAAATCTCTACGTCCGCAATTTTTTAATCA
ATATATTGGTCAAGATAAAGTCAAAGAACAATTAGAAATCTTTATTAAAGCAGCAAAAATGCGTGAAGAAGTTTTGGATC
ACGTATTACTTTTTGGTCCTCCGGGACTTGGTAAGACAACAATGGCATTTGTCATTGCCAATGAGTTGGGGGTTAATATT
AAACAAACAGCGGGTCCTGCCATTGAAAAGCCAGGAGATTTAGTTGCGATTTTGAATGAATTGGAACCTGGCGATGTGCT
ATTTATTGATGAAATTCATCGGATGCCAATGCAAGTTGAAGAAGTTCTTTATAGCGCTATGGAAGATTTCTACATTGATA
TTATGCTTGGTTCTGGTGATGGTTCACGCTCGGTTCATTTAGATTTGCCGCCATTTACTCTAGTTGGGGCAACAACAAGA
GCTGGAATGCTTTCGAATCCATTGCGTGCCCGTTTTGGAATTTCAAGTCATATGGAGTATTATCAAGAGCGTGATTTGGA
AGAAATTGTTAAAAGAACAGCTGATATTTTTGAAGTCGAAGTTATTGATAATGCCGCTTTAGAGATTGCTTTACGTAGTC
GAGGGACTCCGCGGATTGCCAATCGTTTACTTAAAAGAGTGCGTGATTTTGCTCAAATAATGGGGGATGGCCGAGTGGAT
AAAGCAATTACCGATAAGGCCTTGTCTATTCTTGATGTTGATGCCGCTGGTTTGGACTATATTGACCAAAAAATTCTCCG
CACAATGATTGAAATGTACCACGGTGGTCCTGTTGGGATTGGAACTTTGGCGGTAAATATTGCTGAAGACCGTGAAACGG
TCGAGGATATGTATGAACCTTATTTGATTCAAAAAGGATTTTTGATGAGAACCAAACAGGGACGTAAGGTGACTCAAAGA
GCCTATGAACACCTAGGTTACGTTTATAATGAAGAAGATTGA
ATGAACGATATATTAAACAAAGAGCCAATGGAAGAAGATTACGGTATTGAAAAATCTCTACGTCCGCAATTTTTTAATCA
ATATATTGGTCAAGATAAAGTCAAAGAACAATTAGAAATCTTTATTAAAGCAGCAAAAATGCGTGAAGAAGTTTTGGATC
ACGTATTACTTTTTGGTCCTCCGGGACTTGGTAAGACAACAATGGCATTTGTCATTGCCAATGAGTTGGGGGTTAATATT
AAACAAACAGCGGGTCCTGCCATTGAAAAGCCAGGAGATTTAGTTGCGATTTTGAATGAATTGGAACCTGGCGATGTGCT
ATTTATTGATGAAATTCATCGGATGCCAATGCAAGTTGAAGAAGTTCTTTATAGCGCTATGGAAGATTTCTACATTGATA
TTATGCTTGGTTCTGGTGATGGTTCACGCTCGGTTCATTTAGATTTGCCGCCATTTACTCTAGTTGGGGCAACAACAAGA
GCTGGAATGCTTTCGAATCCATTGCGTGCCCGTTTTGGAATTTCAAGTCATATGGAGTATTATCAAGAGCGTGATTTGGA
AGAAATTGTTAAAAGAACAGCTGATATTTTTGAAGTCGAAGTTATTGATAATGCCGCTTTAGAGATTGCTTTACGTAGTC
GAGGGACTCCGCGGATTGCCAATCGTTTACTTAAAAGAGTGCGTGATTTTGCTCAAATAATGGGGGATGGCCGAGTGGAT
AAAGCAATTACCGATAAGGCCTTGTCTATTCTTGATGTTGATGCCGCTGGTTTGGACTATATTGACCAAAAAATTCTCCG
CACAATGATTGAAATGTACCACGGTGGTCCTGTTGGGATTGGAACTTTGGCGGTAAATATTGCTGAAGACCGTGAAACGG
TCGAGGATATGTATGAACCTTATTTGATTCAAAAAGGATTTTTGATGAGAACCAAACAGGGACGTAAGGTGACTCAAAGA
GCCTATGAACACCTAGGTTACGTTTATAATGAAGAAGATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Streptococcus pneumoniae R6 |
78.614 |
99.7 |
0.784 |
| ruvB | Streptococcus pneumoniae D39 |
78.614 |
99.7 |
0.784 |
| ruvB | Streptococcus pneumoniae TIGR4 |
78.313 |
99.7 |
0.781 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
61.491 |
96.697 |
0.595 |
| ruvB | Helicobacter pylori 26695 |
51.242 |
96.697 |
0.495 |
| ruvB | Synechocystis sp. PCC 6803 |
51.613 |
93.093 |
0.48 |