Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QZH48_RS11980 Genome accession   NZ_CP129879
Coordinates   2439405..2439998 (-) Length   197 a.a.
NCBI ID   WP_003131995.1    Uniprot ID   Q9CDL2
Organism   Lactococcus lactis subsp. lactis strain CAB701     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2434405..2444998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZH48_RS11940 (QZH48_11940) - 2434849..2435016 (-) 168 WP_230315131.1 hypothetical protein -
  QZH48_RS11945 (QZH48_11945) - 2435298..2435600 (+) 303 Protein_2316 integrase core domain-containing protein -
  QZH48_RS11950 (QZH48_11950) - 2435844..2436128 (-) 285 WP_038602483.1 bacteriocin immunity protein -
  QZH48_RS11955 (QZH48_11955) - 2436166..2436339 (-) 174 WP_229049640.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  QZH48_RS11960 (QZH48_11960) - 2436451..2436771 (-) 321 WP_256294209.1 hypothetical protein -
  QZH48_RS11965 (QZH48_11965) - 2436909..2437070 (-) 162 WP_301675738.1 bacteriocin -
  QZH48_RS11970 (QZH48_11970) - 2437256..2438140 (-) 885 WP_038602487.1 XRE/MutR family transcriptional regulator -
  QZH48_RS11975 (QZH48_11975) ruvB 2438277..2439278 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QZH48_RS11980 (QZH48_11980) ruvA 2439405..2439998 (-) 594 WP_003131995.1 Holliday junction branch migration protein RuvA Machinery gene
  QZH48_RS11985 (QZH48_11985) hexB 2440110..2442080 (-) 1971 WP_146978291.1 DNA mismatch repair endonuclease MutL Machinery gene
  QZH48_RS11990 (QZH48_11990) - 2442209..2442904 (-) 696 WP_038602492.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21166.73 Da        Isoelectric Point: 5.8174

>NTDB_id=781244 QZH48_RS11980 WP_003131995.1 2439405..2439998(-) (ruvA) [Lactococcus lactis subsp. lactis strain CAB701]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=781244 QZH48_RS11980 WP_003131995.1 2439405..2439998(-) (ruvA) [Lactococcus lactis subsp. lactis strain CAB701]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGCTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCGGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGTG
AAGATGCCCACAGTCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTCCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CDL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462