Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PP175_RS25100 Genome accession   NZ_CP116887
Coordinates   4962367..4962840 (-) Length   157 a.a.
NCBI ID   WP_272440902.1    Uniprot ID   -
Organism   Aneurinibacillus sp. Ricciae_BoGa-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4957367..4967840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PP175_RS25075 (PP175_25075) - 4958327..4959307 (-) 981 WP_272440899.1 YybS family protein -
  PP175_RS25080 (PP175_25080) - 4959544..4959984 (+) 441 WP_272443373.1 mannosyltransferase family protein -
  PP175_RS25085 (PP175_25085) - 4960458..4961165 (+) 708 WP_272440900.1 glycosyltransferase -
  PP175_RS25090 (PP175_25090) - 4961398..4961919 (+) 522 Protein_4780 phosphomannose isomerase type II C-terminal cupin domain -
  PP175_RS25095 (PP175_25095) rpsR 4962095..4962331 (-) 237 WP_272440901.1 30S ribosomal protein S18 -
  PP175_RS25100 (PP175_25100) ssbA 4962367..4962840 (-) 474 WP_272440902.1 single-stranded DNA-binding protein Machinery gene
  PP175_RS25105 (PP175_25105) rpsF 4962862..4963152 (-) 291 WP_272440903.1 30S ribosomal protein S6 -
  PP175_RS25110 (PP175_25110) ychF 4963357..4964463 (-) 1107 WP_272440904.1 redox-regulated ATPase YchF -
  PP175_RS25115 (PP175_25115) - 4964567..4966366 (-) 1800 WP_272440905.1 methyl-accepting chemotaxis protein -
  PP175_RS25120 (PP175_25120) - 4966711..4966932 (-) 222 WP_272440906.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17494.29 Da        Isoelectric Point: 5.0012

>NTDB_id=780810 PP175_RS25100 WP_272440902.1 4962367..4962840(-) (ssbA) [Aneurinibacillus sp. Ricciae_BoGa-3]
MINRAILLGRLTKDPELRYTPNGVAVATFTLAIDRRTTNQQGERETDFIPVVAWRQLAELCAQYLKKGQQAAAEGRIQVR
NYENKEGRKVYVTEIVADNVQFLSGGQGQSSGGHTGGGFESDFGEQRNNNNRRDSFNDNPFAGDQKPIDISDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=780810 PP175_RS25100 WP_272440902.1 4962367..4962840(-) (ssbA) [Aneurinibacillus sp. Ricciae_BoGa-3]
ATGATTAATCGTGCGATATTGTTAGGTCGCTTAACCAAAGATCCTGAACTTCGCTACACGCCAAATGGAGTTGCTGTCGC
TACATTTACCCTTGCGATTGATCGAAGAACAACCAATCAGCAGGGTGAGCGTGAAACGGACTTTATTCCGGTTGTAGCCT
GGCGCCAACTGGCCGAATTGTGTGCCCAGTATTTGAAGAAAGGGCAGCAGGCGGCGGCAGAAGGGCGTATCCAGGTTCGC
AATTATGAGAATAAAGAAGGACGTAAAGTTTATGTTACGGAAATCGTAGCAGACAATGTTCAATTCTTAAGCGGTGGACA
AGGACAGTCATCTGGCGGTCATACTGGCGGAGGGTTTGAATCAGACTTTGGCGAACAGCGCAACAATAACAATCGTCGCG
ATTCCTTTAATGATAATCCCTTTGCCGGTGACCAGAAACCGATCGATATTTCGGATGATGATCTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.631
  ssb Latilactobacillus sakei subsp. sakei 23K

45.93

100

0.503
  ssb Neisseria gonorrhoeae MS11

35.838

100

0.395
  ssb Neisseria meningitidis MC58

35.227

100

0.395
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.389