Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   PND17_RS08995 Genome accession   NZ_CP116772
Coordinates   1716063..1717556 (+) Length   497 a.a.
NCBI ID   WP_011227407.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1711063..1722556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS08970 (PND17_08970) - 1711713..1712921 (-) 1209 WP_271295738.1 CCA tRNA nucleotidyltransferase -
  PND17_RS08975 (PND17_08975) dapB 1712918..1713685 (-) 768 WP_004197279.1 4-hydroxy-tetrahydrodipicolinate reductase -
  PND17_RS08980 (PND17_08980) - 1713746..1714595 (-) 850 Protein_1754 DegV family protein -
  PND17_RS08985 (PND17_08985) - 1714597..1714971 (-) 375 WP_011680796.1 DUF1149 family protein -
  PND17_RS08990 (PND17_08990) - 1715172..1715867 (-) 696 WP_271298473.1 GNAT family N-acetyltransferase -
  PND17_RS08995 (PND17_08995) amiC 1716063..1717556 (+) 1494 WP_011227407.1 ABC transporter permease Regulator
  PND17_RS09000 (PND17_09000) amiD 1717556..1718482 (+) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  PND17_RS09005 (PND17_09005) amiE 1718492..1719577 (+) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  PND17_RS10055 amiF 1719570..1720631 (+) 1062 WP_336297435.1 Tn3 family transposase Regulator
  PND17_RS09020 (PND17_09020) - 1720820..1722244 (-) 1425 WP_271298475.1 amino acid permease -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55721.59 Da        Isoelectric Point: 10.0618

>NTDB_id=780070 PND17_RS08995 WP_011227407.1 1716063..1717556(+) (amiC) [Streptococcus thermophilus strain strain TSGB 4141]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTIFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=780070 PND17_RS08995 WP_011227407.1 1716063..1717556(+) (amiC) [Streptococcus thermophilus strain strain TSGB 4141]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTTCCGAGGCGTCTGATTTTCAGACAAGACCCGAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGCTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAATGG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACAATCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

99.799

100

0.998
  amiC Streptococcus thermophilus LMD-9

99.396

100

0.994
  amiC Streptococcus salivarius strain HSISS4

97.183

100

0.972