Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   PND17_RS09000 Genome accession   NZ_CP116772
Coordinates   1717556..1718482 (+) Length   308 a.a.
NCBI ID   WP_002946409.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1712556..1723482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS08975 (PND17_08975) dapB 1712918..1713685 (-) 768 WP_004197279.1 4-hydroxy-tetrahydrodipicolinate reductase -
  PND17_RS08980 (PND17_08980) - 1713746..1714595 (-) 850 Protein_1754 DegV family protein -
  PND17_RS08985 (PND17_08985) - 1714597..1714971 (-) 375 WP_011680796.1 DUF1149 family protein -
  PND17_RS08990 (PND17_08990) - 1715172..1715867 (-) 696 WP_271298473.1 GNAT family N-acetyltransferase -
  PND17_RS08995 (PND17_08995) amiC 1716063..1717556 (+) 1494 WP_011227407.1 ABC transporter permease Regulator
  PND17_RS09000 (PND17_09000) amiD 1717556..1718482 (+) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  PND17_RS09005 (PND17_09005) amiE 1718492..1719577 (+) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  PND17_RS10055 amiF 1719570..1720631 (+) 1062 WP_336297435.1 Tn3 family transposase Regulator
  PND17_RS09020 (PND17_09020) - 1720820..1722244 (-) 1425 WP_271298475.1 amino acid permease -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34694.85 Da        Isoelectric Point: 9.7054

>NTDB_id=780071 PND17_RS09000 WP_002946409.1 1717556..1718482(+) (amiD) [Streptococcus thermophilus strain strain TSGB 4141]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=780071 PND17_RS09000 WP_002946409.1 1717556..1718482(+) (amiD) [Streptococcus thermophilus strain strain TSGB 4141]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAATGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

100

100

1
  amiD Streptococcus thermophilus LMD-9

100

100

1
  amiD Streptococcus salivarius strain HSISS4

96.429

100

0.964