Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   PND17_RS10055 Genome accession   NZ_CP116772
Coordinates   1719570..1720631 (+) Length   353 a.a.
NCBI ID   WP_336297435.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1714570..1725631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS08985 (PND17_08985) - 1714597..1714971 (-) 375 WP_011680796.1 DUF1149 family protein -
  PND17_RS08990 (PND17_08990) - 1715172..1715867 (-) 696 WP_271298473.1 GNAT family N-acetyltransferase -
  PND17_RS08995 (PND17_08995) amiC 1716063..1717556 (+) 1494 WP_011227407.1 ABC transporter permease Regulator
  PND17_RS09000 (PND17_09000) amiD 1717556..1718482 (+) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  PND17_RS09005 (PND17_09005) amiE 1718492..1719577 (+) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  PND17_RS10055 amiF 1719570..1720631 (+) 1062 WP_336297435.1 Tn3 family transposase Regulator
  PND17_RS09020 (PND17_09020) - 1720820..1722244 (-) 1425 WP_271298475.1 amino acid permease -
  PND17_RS09025 (PND17_09025) - 1722281..1723660 (-) 1380 WP_084829257.1 glutamate decarboxylase -
  PND17_RS09030 (PND17_09030) - 1723894..1724673 (+) 780 WP_272591617.1 protein rep -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 40272.01 Da        Isoelectric Point: 9.0262

>NTDB_id=780074 PND17_RS10055 WP_336297435.1 1719570..1720631(+) (amiF) [Streptococcus thermophilus strain strain TSGB 4141]
MPEKLVEVKNVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDFIKLNLPYNGSEGKLCNRTAHSIQERKVEASTILSKLGSYARKNSLAKTAQEMGKIEKTIFLANYYIDEL
TRRRVQKGLNKTEAINSLSRKVNIGKNDEMYAPSYEGQSQIAKLSDLVLNIIVVWNSLHLQEAIKRLQEKEMCPEELITH
ISPIRWAHIQFNGDYMFSNEQITNIQSLYKNEL

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=780074 PND17_RS10055 WP_336297435.1 1719570..1720631(+) (amiF) [Streptococcus thermophilus strain strain TSGB 4141]
ATGCCTGAGAAATTAGTTGAAGTAAAAAATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTTATTAAACTCAATTTACCCTATAATGGATCTGAGGGGAAACTTTGCAA
CAGAACCGCGCATTCTATACAAGAAAGAAAAGTAGAAGCATCAACGATTCTTTCTAAGTTAGGCTCTTATGCACGTAAAA
ATAGTTTAGCTAAGACGGCTCAAGAAATGGGGAAAATAGAAAAAACCATTTTTCTAGCTAATTATTACATCGACGAATTA
ACTCGGCGACGTGTGCAAAAAGGCTTAAACAAGACTGAAGCAATCAATTCATTATCTAGAAAAGTAAACATAGGAAAGAA
TGATGAAATGTATGCTCCATCTTACGAAGGCCAAAGCCAAATTGCAAAACTGTCTGATTTAGTCTTAAATATTATCGTCG
TGTGGAATAGTCTCCATCTGCAGGAAGCAATAAAAAGATTACAAGAAAAAGAAATGTGTCCCGAAGAGTTAATTACTCAT
ATTTCTCCAATACGCTGGGCACATATCCAGTTCAATGGTGATTACATGTTCAGCAATGAACAAATAACTAATATCCAATC
TCTTTATAAAAACGAGCTTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-172)

Tn3 transposase DDE domain (DDE_Tnp_Tn3)

(188-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

96.61

50.142

0.484
  amiF Streptococcus thermophilus LMG 18311

96.045

50.142

0.482
  amiF Streptococcus salivarius strain HSISS4

93.22

50.142

0.467