Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PJU73_RS08585 Genome accession   NZ_CP116766
Coordinates   1858347..1859549 (+) Length   400 a.a.
NCBI ID   WP_237091895.1    Uniprot ID   -
Organism   Neisseria lisongii strain ZJ106     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1853347..1864549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJU73_RS08570 (PJU73_08570) - 1854137..1854733 (+) 597 WP_237091892.1 DUF4390 domain-containing protein -
  PJU73_RS08575 (PJU73_08575) - 1854733..1856859 (+) 2127 WP_237091893.1 PAS domain-containing sensor histidine kinase -
  PJU73_RS08580 (PJU73_08580) - 1856846..1858126 (+) 1281 WP_237091894.1 sigma-54 dependent transcriptional regulator -
  PJU73_RS08585 (PJU73_08585) dprA 1858347..1859549 (+) 1203 WP_237091895.1 DNA-processing protein DprA Machinery gene
  PJU73_RS08590 (PJU73_08590) - 1859661..1860116 (+) 456 WP_237091896.1 DUF494 family protein -
  PJU73_RS08595 (PJU73_08595) topA 1860199..1862514 (+) 2316 WP_237091897.1 type I DNA topoisomerase -
  PJU73_RS08600 (PJU73_08600) - 1862608..1862898 (+) 291 WP_237091898.1 nucleotidyltransferase family protein -
  PJU73_RS08605 (PJU73_08605) - 1862895..1863245 (+) 351 WP_237091899.1 DUF86 domain-containing protein -
  PJU73_RS08610 (PJU73_08610) - 1863342..1863866 (-) 525 WP_272606960.1 hypothetical protein -
  PJU73_RS08615 (PJU73_08615) - 1863937..1864374 (+) 438 WP_237091901.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 42408.41 Da        Isoelectric Point: 6.3671

>NTDB_id=780010 PJU73_RS08585 WP_237091895.1 1858347..1859549(+) (dprA) [Neisseria lisongii strain ZJ106]
MGENERRAWVQLALTPYIGPESFLQLLQHFGSAQAALAASAEQIRNIVRHKQAASAWADTEKRRLAEQAAEAALAWEMRD
GCRLLLLHDSDFPLMLAEGITPPPLLFARGQTEYLSRPAVAVVGSRHATPQALRIAQEFGAALSGQGITVVSGMAAGIDT
AAHQGALRHNGGTVAVWGTGIDRVYPAANRRLAHEIAEKGLILSEFPLDTRPLAGNFPRRNRLIAALSHATLVVEAAPAS
GSLITAALAAEMGREVMAVPGSIDNPHSKGCHQLIKSGAKLVECLDDILQECPALLQNPLSSAYSVMPTKKTPDAKPPQA
ATAGFQTASPNVHETVAAVAPVMPSENQALLAAMGYDPVHPDTLADQLAWPAEEIYARLLELELEGTVAAAAGGRYQRVA

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=780010 PJU73_RS08585 WP_237091895.1 1858347..1859549(+) (dprA) [Neisseria lisongii strain ZJ106]
ATGGGAGAAAACGAGCGGCGGGCGTGGGTGCAGCTGGCGCTGACACCCTATATCGGGCCGGAAAGTTTTTTGCAGCTGCT
GCAGCATTTCGGCAGCGCACAGGCGGCCTTGGCGGCTTCGGCAGAACAAATCCGCAACATCGTTCGCCACAAACAGGCCG
CTTCGGCTTGGGCGGACACGGAAAAACGCCGTCTGGCAGAACAGGCCGCCGAAGCGGCTTTGGCGTGGGAAATGCGGGAC
GGTTGCCGCCTGCTGTTGTTGCACGACTCCGATTTTCCGCTTATGCTCGCCGAAGGCATTACCCCGCCGCCGCTGCTGTT
TGCCCGAGGGCAGACCGAATATTTGAGCCGGCCGGCCGTTGCCGTTGTCGGCAGCCGCCATGCCACGCCGCAGGCGCTGC
GGATTGCGCAGGAATTTGGTGCAGCTTTGAGCGGGCAGGGGATTACGGTAGTGTCGGGCATGGCGGCGGGCATCGATACC
GCCGCCCATCAAGGTGCATTGCGTCATAACGGCGGCACGGTGGCGGTTTGGGGAACGGGAATTGACAGAGTGTATCCGGC
GGCCAACCGCCGTTTGGCACACGAAATCGCCGAAAAAGGGCTGATTCTCAGCGAATTTCCGTTGGATACCCGACCGCTGG
CGGGCAACTTCCCCCGCCGCAACCGCCTGATTGCCGCCCTGTCGCACGCCACATTGGTGGTGGAGGCGGCACCGGCTTCC
GGTTCGCTGATTACGGCGGCGCTGGCGGCGGAAATGGGGCGGGAAGTGATGGCGGTTCCGGGTTCGATTGACAATCCGCA
CAGCAAAGGCTGTCATCAACTGATTAAATCGGGGGCAAAACTGGTGGAATGTCTGGACGATATTCTTCAAGAATGCCCCG
CCTTATTGCAAAATCCGCTTTCGTCGGCATATTCTGTTATGCCAACGAAAAAAACGCCTGATGCAAAACCGCCGCAGGCA
GCAACAGCCGGTTTTCAGACGGCCTCGCCAAACGTTCATGAAACTGTCGCAGCGGTTGCCCCCGTGATGCCGTCTGAAAA
CCAAGCATTGCTCGCAGCGATGGGCTATGATCCCGTCCACCCCGATACGCTGGCGGATCAGTTGGCATGGCCTGCAGAAG
AAATTTATGCCCGCCTGCTGGAATTGGAATTGGAAGGCACGGTAGCGGCTGCGGCGGGCGGCCGTTATCAGCGTGTTGCA
TAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(344-394)

DNA recombination-mediator protein A (DNA_processg_A)

(79-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae strain FA1090

66.995

100

0.68
  dprA Neisseria gonorrhoeae MS11

66.176

100

0.675
  dprA Neisseria meningitidis strain C311

66.253

100

0.667
  dprA Neisseria meningitidis MC58

66.253

100

0.667
  dprA Vibrio cholerae strain A1552

37.594

99.75

0.375