Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QYM42_RS12315 Genome accession   NZ_CP129526
Coordinates   2454731..2455732 (-) Length   333 a.a.
NCBI ID   WP_003131994.1    Uniprot ID   Q9CDL3
Organism   Lactococcus lactis strain ZZ-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2449731..2460732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM42_RS12280 (QYM42_12280) - 2450016..2450381 (-) 366 WP_003131985.1 MerR family transcriptional regulator -
  QYM42_RS12285 (QYM42_12285) - 2450482..2450919 (-) 438 WP_015427213.1 low molecular weight protein-tyrosine-phosphatase -
  QYM42_RS12290 (QYM42_12290) - 2451063..2451227 (-) 165 WP_003131988.1 hypothetical protein -
  QYM42_RS12295 (QYM42_12295) - 2451332..2451949 (-) 618 WP_021723261.1 AAA family ATPase -
  QYM42_RS12300 (QYM42_12300) - 2451946..2453133 (-) 1188 WP_251899986.1 ABC transporter permease -
  QYM42_RS12305 (QYM42_12305) - 2453200..2453490 (-) 291 WP_251899987.1 hypothetical protein -
  QYM42_RS12310 (QYM42_12310) - 2453710..2454594 (-) 885 WP_012898698.1 XRE/MutR family transcriptional regulator -
  QYM42_RS12315 (QYM42_12315) ruvB 2454731..2455732 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QYM42_RS12320 (QYM42_12320) ruvA 2455859..2456452 (-) 594 WP_003131995.1 Holliday junction branch migration protein RuvA Machinery gene
  QYM42_RS12325 (QYM42_12325) hexB 2456562..2458532 (-) 1971 WP_032947013.1 DNA mismatch repair endonuclease MutL Machinery gene
  QYM42_RS12330 (QYM42_12330) - 2458661..2459356 (-) 696 WP_012898700.1 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37633.17 Da        Isoelectric Point: 4.5825

>NTDB_id=779755 QYM42_RS12315 WP_003131994.1 2454731..2455732(-) (ruvB) [Lactococcus lactis strain ZZ-2]
MNDILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGLGKTTMAFVIANELGVNI
KQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVLYSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGISSHMEYYQERDLEEIVKRTADIFEVEVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVD
KAITDKALSILDVDAAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLIQKGFLMRTKQGRKVTQR
AYEHLGYVYNEED

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=779755 QYM42_RS12315 WP_003131994.1 2454731..2455732(-) (ruvB) [Lactococcus lactis strain ZZ-2]
ATGAACGATATATTAAACAAAGAGCCAATGGAAGAAGATTACGGTATTGAAAAATCTCTACGTCCGCAATTTTTTAATCA
ATATATTGGTCAAGATAAAGTCAAAGAACAATTAGAAATCTTTATTAAAGCAGCAAAAATGCGTGAAGAAGTTTTGGACC
ATGTATTACTTTTTGGTCCTCCGGGACTTGGTAAGACAACAATGGCATTTGTCATTGCCAATGAGTTGGGAGTTAATATT
AAACAAACAGCGGGTCCTGCCATTGAAAAGCCAGGAGATTTAGTTGCGATTTTGAATGAATTGGAACCTGGCGATGTGCT
ATTTATTGATGAAATTCATCGGATGCCAATGCAAGTTGAAGAAGTTCTCTATAGCGCTATGGAAGATTTCTACATTGATA
TTATGCTTGGTTCTGGTGATGGTTCACGCTCGGTTCATTTAGATTTGCCGCCATTTACTCTAGTTGGGGCAACAACAAGA
GCTGGAATGCTTTCTAATCCATTGCGTGCCCGTTTTGGGATTTCAAGTCATATGGAGTATTATCAAGAGCGTGATTTAGA
AGAAATTGTTAAAAGAACAGCTGATATTTTTGAAGTCGAAGTTATTGATAATGCCGCTTTAGAGATTGCTTTACGTAGTC
GAGGGACTCCGCGGATTGCCAATCGTTTACTTAAACGAGTGCGTGATTTTGCTCAAATAATGGGGGATGGCCGAGTGGAT
AAAGCAATTACCGATAAGGCCTTGTCTATTCTTGATGTTGATGCCGCTGGTTTGGATTATATTGACCAAAAAATTCTCCG
CACAATGATTGAAATGTACCACGGTGGTCCTGTTGGGATTGGAACTTTGGCGGTAAATATTGCCGAAGACCGTGAAACGG
TCGAGGATATGTATGAACCTTATTTGATTCAAAAAGGATTTTTGATGAGAACTAAACAGGGACGTAAGGTGACCCAAAGA
GCCTATGAACACTTAGGTTACGTTTATAATGAAGAAGATTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CDL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae R6

78.614

99.7

0.784
  ruvB Streptococcus pneumoniae D39

78.614

99.7

0.784
  ruvB Streptococcus pneumoniae TIGR4

78.313

99.7

0.781
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.491

96.697

0.595
  ruvB Helicobacter pylori 26695

51.242

96.697

0.495
  ruvB Synechocystis sp. PCC 6803

51.613

93.093

0.48