Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QYM42_RS11895 Genome accession   NZ_CP129526
Coordinates   2359406..2360425 (-) Length   339 a.a.
NCBI ID   WP_047206974.1    Uniprot ID   -
Organism   Lactococcus lactis strain ZZ-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2354406..2365425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM42_RS11860 (QYM42_11860) - 2354559..2354807 (-) 249 WP_251899967.1 helix-turn-helix transcriptional regulator -
  QYM42_RS11865 (QYM42_11865) - 2354988..2355647 (+) 660 WP_301675293.1 hypothetical protein -
  QYM42_RS11870 (QYM42_11870) - 2355910..2356464 (+) 555 WP_251899969.1 helix-turn-helix domain-containing protein -
  QYM42_RS11875 (QYM42_11875) - 2356475..2357062 (+) 588 WP_251899970.1 hypothetical protein -
  QYM42_RS11880 (QYM42_11880) - 2357124..2357675 (+) 552 WP_301675294.1 hypothetical protein -
  QYM42_RS11885 (QYM42_11885) - 2357798..2359255 (+) 1458 WP_301675295.1 recombinase family protein -
  QYM42_RS11890 (QYM42_11890) - 2359252..2359392 (-) 141 WP_228248618.1 hypothetical protein -
  QYM42_RS11895 (QYM42_11895) comGB 2359406..2360425 (-) 1020 WP_047206974.1 competence type IV pilus assembly protein ComGB Machinery gene
  QYM42_RS11900 (QYM42_11900) comGA 2360373..2361311 (-) 939 WP_058206479.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 38256.98 Da        Isoelectric Point: 10.1935

>NTDB_id=779748 QYM42_RS11895 WP_047206974.1 2359406..2360425(-) (comGB) [Lactococcus lactis strain ZZ-2]
MDISHLLKPKGKKLRLIKQAKLIQLMGNLLNSGFNLGEVINFLSLSKLVEKEFTLKMKEGLASGQALSELLESLSFSKNV
VTQLALVEVHGNLSGTMQLVELHLKKQLKVKNKLVEVATYPILLLIFLVGIMWGLKNYLLPQLNSGSNFATLLINHLPLV
FFSFGAFIFLLTALSVTLLKRKSAIMNFTFLVKLPLVHSFIRLYLTAYFAREWGNLIAQGVELRQIINLMKKQKSRIFSE
VGKNLDLELNAGRSFEQAVSKLALFLPELSLMIEYGAIKDKLGLELSLYADECWEQFFTKIDRLMQLIQPLVFIFVALMI
ILLYAAMLLPIYSNMGSGI

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=779748 QYM42_RS11895 WP_047206974.1 2359406..2360425(-) (comGB) [Lactococcus lactis strain ZZ-2]
ATGGATATCTCACACCTACTGAAGCCAAAAGGGAAAAAATTAAGACTGATTAAACAAGCCAAACTTATCCAACTGATGGG
AAATCTTTTGAATAGTGGATTTAATTTAGGAGAAGTGATAAATTTCTTATCTTTATCAAAACTTGTGGAAAAAGAATTTA
CATTAAAAATGAAAGAAGGTCTCGCTTCTGGTCAAGCTTTATCAGAGCTTTTAGAAAGTCTTTCATTTTCTAAAAATGTG
GTGACACAACTTGCTTTGGTAGAAGTGCATGGTAACTTGTCAGGGACGATGCAATTAGTTGAACTTCATCTAAAAAAACA
GCTTAAAGTTAAAAATAAATTAGTGGAAGTTGCTACTTATCCAATATTGTTATTAATTTTTCTGGTTGGAATTATGTGGG
GCTTAAAAAATTATTTACTACCACAACTCAATAGTGGCAGTAACTTTGCTACTCTATTGATTAATCATTTACCCTTAGTA
TTTTTTTCGTTTGGAGCTTTTATATTTTTACTGACAGCTTTGTCAGTAACTCTTTTAAAACGAAAATCAGCAATAATGAA
TTTTACATTTCTTGTTAAATTACCTCTGGTTCATTCTTTTATCCGTTTATATTTAACAGCTTACTTTGCAAGAGAATGGG
GAAATCTAATTGCTCAAGGTGTTGAATTACGTCAAATTATTAACTTGATGAAAAAACAAAAAAGTCGAATTTTTTCAGAA
GTTGGCAAGAATCTTGATTTAGAATTGAATGCTGGTCGGTCTTTTGAACAAGCTGTCAGTAAACTTGCGCTTTTTTTACC
CGAGCTCTCGTTAATGATTGAATATGGAGCTATTAAAGATAAATTAGGCTTAGAGCTTTCGCTGTATGCGGATGAATGTT
GGGAACAATTTTTTACAAAGATAGATCGTTTAATGCAATTAATCCAACCTCTTGTTTTTATTTTTGTAGCATTGATGATT
ATTTTGCTATATGCAGCCATGTTACTCCCCATCTATTCAAATATGGGTTCTGGAATATAG

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(23-141)

Type II secretion system (T2SS), protein F (T2SSF)

(209-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Lactococcus lactis subsp. cremoris KW2

83.728

99.705

0.835
  comGB Streptococcus gordonii str. Challis substr. CH1

53.593

98.525

0.528
  comGB/cglB Streptococcus mitis SK321

51.343

98.82

0.507
  comGB/cglB Streptococcus pneumoniae TIGR4

51.045

98.82

0.504
  comGB/cglB Streptococcus pneumoniae Rx1

51.045

98.82

0.504
  comGB/cglB Streptococcus pneumoniae D39

51.045

98.82

0.504
  comGB/cglB Streptococcus pneumoniae R6

51.045

98.82

0.504
  comGB/cglB Streptococcus mitis NCTC 12261

50.448

98.82

0.499
  comGB Streptococcus mutans UA140

52.866

92.625

0.49
  comGB Streptococcus mutans UA159

52.548

92.625

0.487