Detailed information NTG0779044

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: POF49_RS10315
• Genome accession: NZ_CP116680
• Coordinates: 2144727..2145428 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii Canada BC-5
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2139727..2150428

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
POF49_RS10285 (POF49_10285)	-	2140034..2140477 (-)	444	WP_001246675.1	SRPBCC family protein	-
POF49_RS10290 (POF49_10290)	tadA	2140547..2141050 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
POF49_RS10295 (POF49_10295)	-	2141057..2142181 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
POF49_RS10300 (POF49_10300)	ung	2142178..2142891 (-)	714	WP_001177527.1	uracil-DNA glycosylase	-
POF49_RS10305 (POF49_10305)	-	2142942..2143538 (-)	597	WP_000908449.1	6-pyruvoyl trahydropterin synthase family protein	-
POF49_RS10310 (POF49_10310)	gspK	2143768..2144727 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
POF49_RS10315 (POF49_10315)	xcpW	2144727..2145428 (-)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
POF49_RS10320 (POF49_10320)	xcpV	2145428..2145808 (-)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
POF49_RS10325 (POF49_10325)	-	2145798..2146352 (-)	555	WP_000841373.1	type II secretion system protein	-
POF49_RS10330 (POF49_10330)	-	2146362..2146970 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
POF49_RS10335 (POF49_10335)	-	2147008..2147781 (-)	774	WP_000497300.1	TatD family hydrolase	-
POF49_RS10340 (POF49_10340)	-	2147799..2148140 (-)	342	WP_001183027.1	PilZ domain-containing protein	-
POF49_RS10345 (POF49_10345)	-	2148152..2149132 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
POF49_RS10350 (POF49_10350)	kdsB	2149144..2149905 (-)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=779044 POF49_RS10315 WP_000594579.1 2144727..2145428(-) (xcpW) [Acinetobacter baumannii Canada BC-5]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=779044 POF49_RS10315 WP_000594579.1 2144727..2145428(-) (xcpW) [Acinetobacter baumannii Canada BC-5]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983