Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   QYN05_RS19380 Genome accession   NZ_CP129406
Coordinates   3536705..3537229 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PA272     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3531705..3542229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYN05_RS19360 - 3531772..3534243 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  QYN05_RS19365 pilM 3534428..3535492 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  QYN05_RS19370 pilN 3535492..3536088 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  QYN05_RS19375 pilO 3536085..3536708 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  QYN05_RS19380 comL/pilP 3536705..3537229 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  QYN05_RS19385 pilQ 3537283..3539427 (+) 2145 WP_024929062.1 type 4a pilus secretin PilQ Machinery gene
  QYN05_RS19390 aroK 3539439..3539957 (+) 519 WP_003095833.1 shikimate kinase AroK -
  QYN05_RS19395 aroB 3540007..3541113 (+) 1107 WP_147719737.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=779047 QYN05_RS19380 WP_003095836.1 3536705..3537229(+) (comL/pilP) [Pseudomonas aeruginosa strain PA272]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=779047 QYN05_RS19380 WP_003095836.1 3536705..3537229(+) (comL/pilP) [Pseudomonas aeruginosa strain PA272]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362