Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYN05_RS12885 Genome accession   NZ_CP129406
Coordinates   2163858..2164355 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain PA272     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2158858..2169355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYN05_RS12865 pchD 2159642..2161285 (+) 1644 WP_003118945.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  QYN05_RS12870 pchC 2161282..2162037 (+) 756 WP_016252949.1 pyochelin biosynthesis editing thioesterase PchC -
  QYN05_RS12875 pchB 2162037..2162342 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  QYN05_RS12880 pchA 2162339..2163769 (+) 1431 WP_034020815.1 isochorismate synthase PchA -
  QYN05_RS12885 ssb 2163858..2164355 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  QYN05_RS12890 - 2164372..2165760 (-) 1389 WP_003103910.1 MFS transporter -
  QYN05_RS12895 uvrA 2165974..2168811 (+) 2838 WP_034020812.1 excinuclease ABC subunit UvrA Machinery gene
  QYN05_RS12900 bfr 2168883..2169347 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=779011 QYN05_RS12885 WP_003114685.1 2163858..2164355(-) (ssb) [Pseudomonas aeruginosa strain PA272]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=779011 QYN05_RS12885 WP_003114685.1 2163858..2164355(-) (ssb) [Pseudomonas aeruginosa strain PA272]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515